View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_3 (Length: 708)
Name: NF11381_low_3
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 40431667 - 40432051
Alignment:
| Q |
18 |
atataatctacaaggagaccattagctcttcttaattgtgcagtggaaggcttagcgcgtttaataaggaatttggcaaatttggggttgttttctactt |
117 |
Q |
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| T |
40431667 |
atataatctacaaggagaccattagctcttcttaattgtgcagtggaaggcttagcgcgtttaacaaggaatttggcaaatttggggttgttttctagtt |
40431766 |
T |
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| Q |
118 |
tctaagtgcatgatcttttgagttaccttatgcttcaattcgcggatgatataattttatcatgcaacgttacttgggataatttatgggttatttagaa |
217 |
Q |
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| T |
40431767 |
tctaagtgcatgatcttttgagttaccttatgcttcaattcgcggatgatataattttatcatgtaacgttacttgggataatttatgggttatttagaa |
40431866 |
T |
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| Q |
218 |
gcttcgagttggtctccaggctaaacatggatgatcgcttcttcgagtgggatcaattccttcaaattccttggtattatacaaatggtaataatcgaag |
317 |
Q |
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| T |
40431867 |
gctttgagttggtctccaggctaaacatggatgatagcttcttcgagtgggatcaattccttcaaattccttggtat--tacaaatggtaataatcgaag |
40431964 |
T |
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| Q |
318 |
gttatgcaaaacttgaaagccaatgctggatttgttggagaagaggcttgctacttggaagggaaaatacctatcgattgaatgaag |
404 |
Q |
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| T |
40431965 |
gttttgcaaaacttgaaagccaatgctggatttgttggagaagaggcttgctacttggaagggaaaatacctatcgattgaaggaag |
40432051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 451 - 690
Target Start/End: Original strand, 40432048 - 40432287
Alignment:
| Q |
451 |
gaagcatatggagcttagctaatactagggcaacctggtatcctttactattatacatgtatggtgatatttctggaagcatagctttggtttctaattc |
550 |
Q |
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| T |
40432048 |
gaagcatatggagcttagctaatactagggcaacctggtatcctttactattatacatgtatgttggtatttctggaagcatagctttggtttctaattc |
40432147 |
T |
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| Q |
551 |
tagtggtcggtagtggctctattataaaggacatttgcttatnnnnnnnntgtcctttaaaatctcaataattagtaacggactaaaaagtcatatggtc |
650 |
Q |
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| T |
40432148 |
tagtggtcggtagtggctctattataaaggacatttgcttataaaaaaaatgtcctttaaaatctcaataattagtaacggactaaaaagtcatatggtc |
40432247 |
T |
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| Q |
651 |
gtcaattttgcaaagctatttatccccatttttctttctt |
690 |
Q |
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| T |
40432248 |
gtcaattttgcaaagctatttatccccatttttctttctt |
40432287 |
T |
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