View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11381_low_31 (Length: 301)

Name: NF11381_low_31
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11381_low_31
NF11381_low_31
[»] chr6 (4 HSPs)
chr6 (1-212)||(5169799-5170010)
chr6 (4-210)||(7015596-7015808)
chr6 (1-121)||(907561-907681)
chr6 (35-174)||(8609242-8609381)
[»] chr3 (2 HSPs)
chr3 (1-212)||(48762077-48762288)
chr3 (35-118)||(40166432-40166515)
[»] chr2 (1 HSPs)
chr2 (1-212)||(41751413-41751624)
[»] scaffold1598 (1 HSPs)
scaffold1598 (1-212)||(1017-1237)
[»] chr1 (1 HSPs)
chr1 (1-179)||(39180092-39180271)
[»] chr5 (1 HSPs)
chr5 (1-80)||(10641561-10641640)
[»] chr8 (1 HSPs)
chr8 (1-163)||(5242480-5242642)
[»] chr7 (1 HSPs)
chr7 (1-84)||(18478758-18478841)
[»] chr4 (1 HSPs)
chr4 (35-121)||(43605374-43605460)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5169799 - 5170010
Alignment:
Q  1 tcaaaatgaatcccaataattgaggtgaaaaatttgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgatac 100  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5169799 tcaaaatgaatcccaataattgaggtaaaaaatctgatgataggaatcagagaaaaattctccttattttcctccaatttttaacgtgccatcttgatac 5169898  T
Q  101 aatgaactgcattaatttccaactattgccatcccacattgaaaacacaaagctctccactcatcatatttgtttgtttcccacgcatatgcacatgtta 200  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5169899 aatgaactgcattaatttccaactattgtcatctcacattgaaaacacaaagctctccactcatcatatttgtttgtttcccacgcatatgcacatgtta 5169998  T
Q  201 caacacaaaact 212  Q
    ||||||||||||    
T  5169999 caacacaaaact 5170010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 7015596 - 7015808
Alignment:
Q  4 aaatgaatcccaataattgaggtgaaaaatt-tgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgatacaa 102  Q
    |||| |||||||| ||||||||  ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  7015596 aaataaatcccaagaattgagggaaaaaaatctgatgataggaattagagaaaaattctccttattttcctccaatttttaaagtgtcatcttgatacaa 7015695  T
Q  103 tgaactgcattaatttccaactattgccatcccacattgaaaacaca-----aagctctccactcatcatatttgtttgtttcccacgcatatgcacatg 197  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||     || ||||||||||||||||| |||||||||||||| ||||||||||||    
T  7015696 tgaactgcattaattttcaactattgccatctcacattgaaaacacaaaactaaactctccactcatcatatctgtttgtttcccacacatatgcacatg 7015795  T
Q  198 ttacaacacaaaa 210  Q
    |||||||||||||    
T  7015796 ttacaacacaaaa 7015808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 907681 - 907561
Alignment:
Q  1 tcaaaatgaatcccaataattgaggtgaaaaatttgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgatac 100  Q
    |||||| |||| |||||||||||  |  ||||  ||||| |||||||||||||||  |||||||  |||||||||| |||| ||  ||| || |||||||    
T  907681 tcaaaaagaattccaataattgaatttcaaaaaatgatgttaggaatcagagaaattttctcctatttttcctccacttttcaaagtgctatattgatac 907582  T
Q  101 aatgaactgcattaatttcca 121  Q
    |||  ||||||||||||||||    
T  907581 aatagactgcattaatttcca 907561  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 8609381 - 8609242
Alignment:
Q  35 tgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgatacaatgaactgcattaatttccaactattgccatcc 134  Q
    ||||| |||||||||||||||  |||||||  |||||||||| |||| ||  ||| || ||||||||||  |||||||||||||||| |  |||| || |    
T  8609381 tgatgttaggaatcagagaaattttctcctatttttcctccacttttcaatgtgcaatattgatacaatagactgcattaatttccatcctttgctatgc 8609282  T
Q  135 cacattgaaaacacaaagctctccactcatcatatttgtt 174  Q
    | | | ||||||  ||| ||||||||||| ||||| ||||    
T  8609281 cgcctagaaaactaaaacctctccactcaccatatatgtt 8609242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 48762077 - 48762288
Alignment:
Q  1 tcaaaatgaatcccaataattgaggtgaaaaatttgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgatac 100  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48762077 tcaaaatgaatcccaataattgaggtaaaaaatctgatgataggaatcagagaaaaattctccttattttcctccaatttttaacgtgccatcttgatac 48762176  T
Q  101 aatgaactgcattaatttccaactattgccatcccacattgaaaacacaaagctctccactcatcatatttgtttgtttcccacgcatatgcacatgtta 200  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48762177 aatgaactgcattaatttccaactattgtcatcgcacattgaaaacacaaagctctccactcatcatatttgtttgtttcccacgcatatgcacatgtta 48762276  T
Q  201 caacacaaaact 212  Q
    ||||||||||||    
T  48762277 caacacaaaact 48762288  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 40166515 - 40166432
Alignment:
Q  35 tgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgatacaatgaactgcattaattt 118  Q
    ||||| |||||||||||||||  |||||||  |||||||||| |||| ||| ||| ||  |||||||||  |||||||||||||    
T  40166515 tgatggtaggaatcagagaaattttctcctatttttcctccatttttcaacgtgctatactgatacaatagactgcattaattt 40166432  T

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Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 41751413 - 41751624
Alignment:
Q  1 tcaaaatgaatcccaataattgaggtgaaaaatttgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgatac 100  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41751413 tcaaaatgaatcccaataattgaggtaaaaaatatgatgctaggaatcagagaaaaattctccttattttcctcccatttttaacctgccatcttgatac 41751512  T
Q  101 aatgaactgcattaatttccaactattgccatcccacattgaaaacacaaagctctccactcatcatatttgtttgtttcccacgcatatgcacatgtta 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41751513 aatgaactgcattaatttccaactattgtcatcccacattgaaaacacaaagctctccactcatcatatttgtttgtttcccatgcatatgcacatgtta 41751612  T
Q  201 caacacaaaact 212  Q
    || |||||||||    
T  41751613 cagcacaaaact 41751624  T

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Target: scaffold1598 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1017 - 1237
Alignment:
Q  1 tcaaaatgaatcccaataattgaggtgaaaaatttgatgataggaatcagagaaaaattctccttattttcctcca---------atttttaacctgcca 91  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |         ||||||||| |||||    
T  1017 tcaaaatgaatcccaataattgaggtaaaaaatatgatgctaggaatcagagaaaaattctccttattttcctctagaaaatctgatttttaacgtgcca 1116  T
Q  92 tcttgatacaatgaactgcattaatttccaactattgccatcccacattgaaaacacaaagctctccactcatcatatttgtttgtttcccacgcatatg 191  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1117 tcttgatacaatgaactgcattaatttccaactattgtcatcgcacattgaaaacacaaagctctccactcatcatatttgtttgtttcccacgcatatg 1216  T
Q  192 cacatgttacaacacaaaact 212  Q
    |||||||||||||||||||||    
T  1217 cacatgttacaacacaaaact 1237  T

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Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 39180092 - 39180271
Alignment:
Q  1 tcaaaatgaatcccaataattgaggtgaaaaatt-tgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgata 99  Q
    |||||||||||||||| ||||||||  ||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  39180092 tcaaaatgaatcccaagaattgagggaaaaaaatctgatgataggaatcagagaaaaactctccttattttcctccaatttttaaagtgccatcttgata 39180191  T
Q  100 caatgaactgcattaatttccaactattgccatcccacattgaaaacacaaagctctccactcatcatatttgtttgttt 179  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39180192 caatgaactgcattaattttccactattgccatcccacattgaaaacacaaagctctccactcatcatatctgtttgttt 39180271  T

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Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10641640 - 10641561
Alignment:
Q  1 tcaaaatgaatcccaataattgaggtgaaaaatttgatgataggaatcagagaaaaattctccttattttcctccaattt 80  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10641640 tcaaaatgaatcccaataattgaggtaaaaaatctgatgataggaatcagagaaaaattctccttattttcctccaattt 10641561  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 5242642 - 5242480
Alignment:
Q  1 tcaaaatgaatcccaataattgaggtgaaaaatttgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgatac 100  Q
    |||||| |||| |||||||||||  |   |||| ||||| | |||||||||||||| ||  |||| |||||||||| |||||||| |||||| |||||||    
T  5242642 tcaaaaagaataccaataattgaattttgaaatatgatggtgggaatcagagaaaatttagcctttttttcctccactttttaacgtgccatattgatac 5242543  T
Q  101 aatgaactgcattaatttccaactattgccatcccacattgaaaacacaaagctctccactca 163  Q
    |||||| |||||||||||||| |  || | ||||||||| |||||||||||||||||||||||    
T  5242542 aatgaattgcattaatttccatcccttactatcccacatagaaaacacaaagctctccactca 5242480  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 18478758 - 18478841
Alignment:
Q  1 tcaaaatgaatcccaataattgaggtgaaaaatttgatgataggaatcagagaaaaattctccttattttcctccaatttttaa 84  Q
    |||||||||||||||| ||||||||  |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18478758 tcaaaatgaatcccaagaattgagggaaaaaatctgatgataggaattagagaaaaattctccttattttcctccaatttttaa 18478841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 43605460 - 43605374
Alignment:
Q  35 tgatgataggaatcagagaaaaattctccttattttcctccaatttttaacctgccatcttgatacaatgaactgcattaatttcca 121  Q
    ||||| || |||||||||||   |||||||  ||||||||||||| | ||| ||| || |||||||| || ||||||||||||||||    
T  43605460 tgatgttaagaatcagagaatttttctcctatttttcctccaattctcaacgtgctatgttgatacattggactgcattaatttcca 43605374  T

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