View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_33 (Length: 278)
Name: NF11381_low_33
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 8868399 - 8868659
Alignment:
| Q |
18 |
tgtgtaagatacaattacgtggacaaatattgcacagatccataccaagccacagcaggaggagg------------tt---atgcccatctttttgagc |
102 |
Q |
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| T |
8868399 |
tgtgtaagatacaattacgtggacaaatattgcacagatccataccaagccacagcaggaggaggaggaggaggaggttccaatgcccatctttttgagc |
8868498 |
T |
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| Q |
103 |
atatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaaagggtatta |
202 |
Q |
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| T |
8868499 |
atatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgtgaatatttcttcatgtctcaattggagctctaaatcccaagggtatta |
8868598 |
T |
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| Q |
203 |
tatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgagatg |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8868599 |
tatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatgtgatg |
8868659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 8864234 - 8864406
Alignment:
| Q |
86 |
tgcccatctttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctct |
185 |
Q |
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| T |
8864234 |
tgcccttctttttgagcatatagtttacttgaattgcagccatcaagtgactaacagtcctaaatatgtgaatacttcttcatgtctgaatttgaactcc |
8864333 |
T |
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| Q |
186 |
aaatccaaagggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatg |
258 |
Q |
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| T |
8864334 |
aaatccaaagggtattatatatatgctatggctggtgatttaattgctcaagattttcaagttggttgtcatg |
8864406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 258
Target Start/End: Original strand, 9099937 - 9100103
Alignment:
| Q |
92 |
tctttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctctaaatcc |
191 |
Q |
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| T |
9099937 |
tctttttgagcatatagtttacatgaattgtactcatcaagtgattaacaatcataaatatgtgaatgcttcatcttgccttaattcgaactccaaatcc |
9100036 |
T |
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| Q |
192 |
aaagggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatg |
258 |
Q |
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| T |
9100037 |
aaagggtattatatttatgctattgctggtaaattagttgctcaagattttcaagttggttgtcatg |
9100103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 92 - 258
Target Start/End: Complemental strand, 8972124 - 8971961
Alignment:
| Q |
92 |
tctttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctc-aattggagctctaaatc |
190 |
Q |
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| T |
8972124 |
tctttttaagcatatagtttacttgaattgtacccatcaagtaactaacaatcctaaatatgtgaatacttcttcctgtttccaatttgg----ttactc |
8972029 |
T |
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| Q |
191 |
caaagggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatg |
258 |
Q |
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| T |
8972028 |
caaaagtaattatatatatgctatggctggtgatttaattgctcaagattttcaagttggttgtcatg |
8971961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 92 - 258
Target Start/End: Complemental strand, 9007152 - 9006989
Alignment:
| Q |
92 |
tctttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctc-aattggagctctaaatc |
190 |
Q |
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| T |
9007152 |
tctttttaagcatatagtttacttgaattgtacccatcaagtaactaacaatcctaaatatgtgaatacttcttcctgtttccaatttgg----ttactc |
9007057 |
T |
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| Q |
191 |
caaagggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatg |
258 |
Q |
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| T |
9007056 |
caaaagtaattatatatatgctatggctggtgatttaattgctcaagattttcaagttggttgtcatg |
9006989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 258
Target Start/End: Original strand, 9093565 - 9093720
Alignment:
| Q |
94 |
tttttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaa |
193 |
Q |
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| T |
9093565 |
tttttcagcatatagtatacataaattgtagccatcgtgtgaccaacaattctaaatatgtcaatacttcttcctgtctcaa------ctcgcaatccaa |
9093658 |
T |
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| Q |
194 |
agggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatg |
258 |
Q |
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||| || | ||||||||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
9093659 |
aggctact---tttatgctatggctggtgatttaattgtcgaagactttcaagttggttgtcatg |
9093720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 9072447 - 9072567
Alignment:
| Q |
138 |
aacaatcctaaatatgttgatacttcttcatgtctcaatt-ggagctctaaatccaaagggtattatatttatgctatggctggtgatttaattgctgat |
236 |
Q |
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| T |
9072447 |
aacaatcctaaatatgtgaatacttcttcctgtctcactcaggag-tccaaatcaaaaggctattatatttatgctatagctggtcatataactgctgaa |
9072545 |
T |
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| Q |
237 |
gattttcaagttggttgtcatg |
258 |
Q |
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| T |
9072546 |
gatttacaagttggttgtcatg |
9072567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 9136720 - 9136789
Alignment:
| Q |
189 |
tccaaagggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatg |
258 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||| ||||||| |
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| T |
9136720 |
tccaaagggtattctatttatgctatggctggtgatttagttgctcaagattttcaagttggctgtcatg |
9136789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 258
Target Start/End: Complemental strand, 9065387 - 9065225
Alignment:
| Q |
96 |
tttgagcatatagtttacttgaattgtactcatcgagtgaccaacaatcctaaatatgttgatacttcttcatgtctcaattggagctctaaatccaaag |
195 |
Q |
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| T |
9065387 |
tttgagcatatagtttacctgagttgtaccaatcaagtcactagcaattccaactatgtgattacttcaccttgtctcaatcgacactccaaatccaaag |
9065288 |
T |
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| Q |
196 |
ggtattatatttatgctatggctggtgatttaattgctgatgattttcaagttggttgtcatg |
258 |
Q |
| |
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| T |
9065287 |
gcaattatatttatgctatagttggtgatttaacggctgaggactttcaagttggttgtcatg |
9065225 |
T |
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