View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_37 (Length: 256)
Name: NF11381_low_37
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_37 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 40103717 - 40103961
Alignment:
| Q |
11 |
agagaagaagaattaaatgatattagttggtgtgactta-ttatttttgtctaattttgttgattttatgtgaacgtgttcaaataatattaatttagat |
109 |
Q |
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| T |
40103717 |
agagaagaaaaattaaatgatatcagttggtgtgactgaattattgttgtctaattttgttgatttcatgtcaacgtgtccaaataatattaatttaggt |
40103816 |
T |
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| Q |
110 |
atgtatctatcaaatactttctcgaatattaaagacaaagaacacacatatataatactaacgtggtggggtggggacgatatcaacactcgagctcgac |
209 |
Q |
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| T |
40103817 |
atgtatctatcaactactttctcgaatattaaagacaaaga--acacatatataatactaacatggtagggtggggacgatatcaacactcgacctcgac |
40103914 |
T |
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| Q |
210 |
tttaaataatcaagtaaaacccacacacacccacatccataccttgg |
256 |
Q |
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| T |
40103915 |
tttaaataatcaagtaaaactcacacacactcacatccataccttgg |
40103961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 11844054 - 11844163
Alignment:
| Q |
19 |
agaattaaatgatattagttggtgtgacttattatttttgtctaattttgttgattttatgtgaacgtgttcaaataatattaatttagatatgtatcta |
118 |
Q |
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| T |
11844054 |
agaattaaatgatgtcaattgatgtgaccgattatttttgt----ttttgttgatttcatgtgagtgtgcccaaataatattgatttaggtatgtgttta |
11844149 |
T |
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| Q |
119 |
tcaaatactttctc |
132 |
Q |
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| T |
11844150 |
tgaaagactttctc |
11844163 |
T |
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