View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11381_low_38 (Length: 256)

Name: NF11381_low_38
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11381_low_38
NF11381_low_38
[»] chr3 (6 HSPs)
chr3 (43-232)||(31169555-31169743)
chr3 (46-222)||(48886120-48886296)
chr3 (43-221)||(12975430-12975608)
chr3 (101-222)||(49406622-49406743)
chr3 (106-221)||(51305116-51305231)
chr3 (101-219)||(36177884-36178002)
[»] chr8 (5 HSPs)
chr8 (45-221)||(44503872-44504048)
chr8 (107-224)||(30528940-30529057)
chr8 (92-224)||(23550397-23550528)
chr8 (102-225)||(40284157-40284280)
chr8 (106-223)||(26245184-26245301)
[»] chr4 (11 HSPs)
chr4 (43-223)||(33523981-33524161)
chr4 (101-221)||(53346987-53347107)
chr4 (43-201)||(33609559-33609717)
chr4 (92-221)||(48403200-48403328)
chr4 (102-224)||(17329205-17329327)
chr4 (106-223)||(19273469-19273586)
chr4 (105-224)||(13093568-13093687)
chr4 (106-223)||(35809947-35810064)
chr4 (92-219)||(16171192-16171318)
chr4 (102-160)||(23389431-23389489)
chr4 (106-204)||(27864464-27864562)
[»] chr5 (5 HSPs)
chr5 (43-221)||(32362751-32362928)
chr5 (107-220)||(4938750-4938863)
chr5 (106-221)||(39239101-39239216)
chr5 (102-225)||(13478987-13479110)
chr5 (92-210)||(4218725-4218842)
[»] chr2 (4 HSPs)
chr2 (92-225)||(7762477-7762610)
chr2 (107-221)||(5144663-5144777)
chr2 (92-211)||(17486449-17486567)
chr2 (107-218)||(13150908-13151019)
[»] chr1 (1 HSPs)
chr1 (87-221)||(45364123-45364257)
[»] chr7 (6 HSPs)
chr7 (92-221)||(38352261-38352389)
chr7 (92-221)||(20354836-20354964)
chr7 (92-219)||(39770263-39770389)
chr7 (111-219)||(38970715-38970823)
chr7 (128-224)||(12117036-12117132)
chr7 (106-224)||(45548789-45548907)
[»] scaffold1905 (1 HSPs)
scaffold1905 (92-211)||(735-853)
[»] chr6 (2 HSPs)
chr6 (106-223)||(26653554-26653671)
chr6 (106-223)||(26759522-26759639)
[»] scaffold0016 (1 HSPs)
scaffold0016 (126-221)||(65713-65808)
[»] scaffold0004 (1 HSPs)
scaffold0004 (54-181)||(106447-106574)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 31169743 - 31169555
Alignment:
Q  43 cgcgtgtctcacacgcgcccagcttggcaaatgaaaaacggacgtgtggcccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcct 142  Q
    ||||||||||| |||| |||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| | |||||||||||||||||    
T  31169743 cgcgtgtctca-acgcacccaacttggcaaatgaaaaacggacgcgtggcccctgcggtcagactttcaacatgtttaaacccttcatcacctctctcct 31169645  T
Q  143 attctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtcttatattattat 232  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31169644 cttctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtcttatattcttat 31169555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 48886296 - 48886120
Alignment:
Q  46 gtgtctcacacgcgcccagcttggcaaatgaaaaacggacgtgtggcccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctatt 145  Q
    |||||||||||||||||| |||||||||| ||||   |||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||||| ||    
T  48886296 gtgtctcacacgcgcccaacttggcaaataaaaatgcgacgcgtggcccctacggtcagactttcaacatgtttaaacctttcatcacctctctcctctt 48886197  T
Q  146 ctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtctt 222  Q
    |||| ||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||    
T  48886196 ctctaattttcaataaccctctccaatgatttcaataggttgaaaatggcattcaataagccattgtagatggtctt 48886120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 221
Target Start/End: Original strand, 12975430 - 12975608
Alignment:
Q  43 cgcgtgtctcacacgcgcccagcttggcaaatgaaaaacggacgtgtggcccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcct 142  Q
    |||||| |||||||||||||||||||||||||| |||   |||| ||||||||| |  | |||||||||||||||||||| |||||||||||||| ||||    
T  12975430 cgcgtgcctcacacgcgcccagcttggcaaatggaaatgtgacgcgtggcccctccagtgagactttcaacatgtttaaacctttcatcacctctttcct 12975529  T
Q  143 attctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtct 221  Q
     ||| |||||||||||||| || ||||||| |||||||    |||||||| |||||||| |||||||||||||||||||    
T  12975530 cttcgctcattttcaataagccactccaataatttcaataggttgaaaatagcattcaataagccattgtagatggtct 12975608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 49406743 - 49406622
Alignment:
Q  101 tcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattca 200  Q
    ||||| |||||||||||||||  |||||||||||||| |||| ||||||||||||||||| ||| |||||||| ||||||  | ||||||||||||||||    
T  49406743 tcagaatttcaacatgtttaaccctttcatcacctctttcctcttctctcattttcaataccccgctccaatggtttcaatatgttgaaaatggcattca 49406644  T
Q  201 acaagccattgtagatggtctt 222  Q
    | | ||||||||| ||||||||    
T  49406643 ataggccattgtaaatggtctt 49406622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 51305116 - 51305231
Alignment:
Q  106 ctttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaag 205  Q
    ||||||||||||| ||   ||||| |||||||||| | ||| ||||| ||||||| ||  |||||||| | ||||| | ||||| |||||||||||||||    
T  51305116 ctttcaacatgttgaaccttttcaacacctctctcatcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaag 51305215  T
Q  206 ccattgtagatggtct 221  Q
    |||||||| |||||||    
T  51305216 ccattgtaaatggtct 51305231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 36178002 - 36177884
Alignment:
Q  101 tcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattca 200  Q
    |||| ||||||||||||| ||    |||| |||||||  ||| ||| ||||| ||||||| || ||||||||  | ||||| | ||||| ||||||||||    
T  36178002 tcaggctttcaacatgttgaacctcttcaacacctctgccctcttccctcatattcaatagccttctccaatagtctcaacatgttgaatatggcattca 36177903  T
Q  201 acaagccattgtagatggt 219  Q
    ||||||||||||| |||||    
T  36177902 acaagccattgtaaatggt 36177884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 44503872 - 44504048
Alignment:
Q  45 cgtgtctcacacgcgcccagcttggcaaatgaaaaacggacgtgtggcccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctat 144  Q
    |||||||||||| ||||||||||||||||||||||||||||   ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |    
T  44503872 cgtgtctcacacacgcccagcttggcaaatgaaaaacggacacatggcccctgcggtcagactttcaatatgtttaaacctttcatcacctctctcctct 44503971  T
Q  145 tctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtct 221  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  44503972 tctctcattttcaataaccctctccaatgatttcaacctgatgaaaatggcattcaataagccattgtagatggtct 44504048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 30529057 - 30528940
Alignment:
Q  107 tttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagc 206  Q
    |||||||||||||||  |||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||  ||||||||||  ||||||| | ||    
T  30529057 tttcaacatgtttaaccctttcatcacctctttcctcttctctcattttcaatacccctctccaatggtttcaatatattgaaaataacattcaatatgc 30528958  T
Q  207 cattgtagatggtcttat 224  Q
    ||||||| ||||||||||    
T  30528957 cattgtaaatggtcttat 30528940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 23550397 - 23550528
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    |||||||| ||| |||||||||||  ||||  ||||||||||||||||||| ||  ||||||||||||| || |||||||| |||||||| |||||||||    
T  23550397 cccctgcg-tcaaactttcaacatacttaatcctttcatcacctctctcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaa 23550495  T
Q  192 tggcattcaacaagccattgtagatggtcttat 224  Q
    | || ||||| |||||||||| | |||||||||    
T  23550496 ttgctttcaataagccattgtgggtggtcttat 23550528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 40284157 - 40284280
Alignment:
Q  102 cagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaa 201  Q
    ||||||||||||||||| ||   ||||| |||||||||||| ||| ||||| ||||||| ||  |||||||| | ||||| | ||||| |||||||||||    
T  40284157 cagactttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaa 40284256  T
Q  202 caagccattgtagatggtcttata 225  Q
    |||||||||||| |||||||||||    
T  40284257 caagccattgtaaatggtcttata 40284280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 26245184 - 26245301
Alignment:
Q  106 ctttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaag 205  Q
    ||||||||||||| ||   ||||| |||||||||||| ||| ||||| ||||||| ||  |||||||| | ||||| | ||||| |||||||||||||||    
T  26245184 ctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaag 26245283  T
Q  206 ccattgtagatggtctta 223  Q
    |||||||| |||||||||    
T  26245284 ccattgtaaatggtctta 26245301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 223
Target Start/End: Original strand, 33523981 - 33524161
Alignment:
Q  43 cgcgtgtctcacacgcgcccagcttggcaaatgaaaaacggacgtgtggcccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcct 142  Q
    |||||||||||||||||||||||||||||||| ||||   |||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  33523981 cgcgtgtctcacacgcgcccagcttggcaaataaaaatgtgacgcgtggcccctgcggtcagactttcaacatgtttaaacctttcatcacctctctcct 33524080  T
Q  143 attctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtctta 223  Q
     ||||||||||||||||||||||||| |||||||||||    ||||||||||||||||| |||||||||||||||||||||    
T  33524081 cttctctcattttcaataaccctctcaaatgatttcaataggttgaaaatggcattcaataagccattgtagatggtctta 33524161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 221
Target Start/End: Complemental strand, 53347107 - 53346987
Alignment:
Q  101 tcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattca 200  Q
    ||||| |||||||||||||||  |||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||  ||||||||||||||||||    
T  53347107 tcagaatttcaacatgtttaaccctttcatcacctctttccttttctctcattttcaatacccctctccaatggtttcaatatattgaaaatggcattca 53347008  T
Q  201 acaagccattgtagatggtct 221  Q
    | | ||||||||| |||||||    
T  53347007 ataggccattgtaaatggtct 53346987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 201
Target Start/End: Original strand, 33609559 - 33609717
Alignment:
Q  43 cgcgtgtctcacacgcgcccagcttggcaaatgaaaaacggacgtgtggcccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcct 142  Q
    |||||| |||||| | |||| |||||||||||| |||   |||| ||||||||| |  |||||||||||||||||||||| |||||||||||||| ||||    
T  33609559 cgcgtgcctcacatgtgccctgcttggcaaatggaaatgcgacgcgtggcccctccagtcagactttcaacatgtttaaacctttcatcacctctttcct 33609658  T
Q  143 attctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaa 201  Q
     ||||||||||||||||||  | |||||||||||||||    ||||||||| |||||||    
T  33609659 cttctctcattttcaataagtcactccaatgatttcaataggttgaaaatgacattcaa 33609717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 48403328 - 48403200
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    |||||||| |||||||||||||||  ||||  |||||||||||||||| || ||| ||||||||||||| || |||||||| |||||||| |||||||||    
T  48403328 cccctgcg-tcagactttcaacatacttaatcctttcatcacctctcttctcttccctcattttcaatacccttctccaatcatttcaacatattgaaaa 48403230  T
Q  192 tggcattcaacaagccattgtagatggtct 221  Q
    | || ||||||||||||||  |||||||||    
T  48403229 ttgctttcaacaagccattagagatggtct 48403200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 17329327 - 17329205
Alignment:
Q  102 cagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaa 201  Q
    |||| |||||||||||||||  |||||||||||||| |||| |||||||||||||||||   | |||||||| ||||||| | ||||||||    |||||    
T  17329327 cagattttcaacatgtttaacactttcatcacctctttcctcttctctcattttcaatagggcactccaatggtttcaacatgttgaaaatcattttcaa 17329228  T
Q  202 caagccattgtagatggtcttat 224  Q
     | ||||||||||||||||||||    
T  17329227 taggccattgtagatggtcttat 17329205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 19273469 - 19273586
Alignment:
Q  106 ctttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaag 205  Q
    ||||||||||||| ||   ||||| |||||||||||| ||| ||||| ||||||| ||  |||||||| | ||||| | ||||| |||||||||||||||    
T  19273469 ctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaag 19273568  T
Q  206 ccattgtagatggtctta 223  Q
    |||||||| |||||||||    
T  19273569 ccattgtaaatggtctta 19273586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 13093687 - 13093568
Alignment:
Q  105 actttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaa 204  Q
    |||||||||||||| ||   ||||| |||||||||||| ||| ||||| |||| || ||  |||||||| | ||||| | ||||| ||||||||||||||    
T  13093687 actttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcattagcctcctccaatggtctcaacatgttgaatatggcattcaacaa 13093588  T
Q  205 gccattgtagatggtcttat 224  Q
    ||||||||| ||||||||||    
T  13093587 gccattgtaaatggtcttat 13093568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 35809947 - 35810064
Alignment:
Q  106 ctttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaag 205  Q
    ||||||||||||| ||   ||||| |||||||||||| ||| ||||| |||| || ||  |||||||| | ||||| | ||||| |||||||||||||||    
T  35809947 ctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcagtagcctcctccaatggtctcaacatgttgaatatggcattcaacaag 35810046  T
Q  206 ccattgtagatggtctta 223  Q
    |||||||| |||||||||    
T  35810047 ccattgtaaatggtctta 35810064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 16171318 - 16171192
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    |||||||| |||||  ||||||||  ||||  ||||||||||||||||||| ||| || || ||||||| || |||||||||   ||||| | ||||| |    
T  16171318 cccctgcggtcagatattcaacatacttaatcctttcatcacctctctcctcttcccttatattcaatagccttctccaatg-gctcaacatgttgaata 16171220  T
Q  192 tggcattcaacaagccattgtagatggt 219  Q
    |||||||||||||||||||||| |||||    
T  16171219 tggcattcaacaagccattgtaaatggt 16171192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 23389489 - 23389431
Alignment:
Q  102 cagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaata 160  Q
    |||| |||||||||||||||  |||||||||||||| |||| |||||||||||||||||    
T  23389489 cagattttcaacatgtttaatactttcatcacctctttcctcttctctcattttcaata 23389431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 27864464 - 27864562
Alignment:
Q  106 ctttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaa 204  Q
    ||||||||||||| ||   ||||| |||||||||||| ||| ||||| ||||||| ||  |||||| | | ||||| | ||||| ||||||||||||||    
T  27864464 ctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagcctcctccaacggtctcaacatgttgaatatggcattcaacaa 27864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 32362928 - 32362751
Alignment:
Q  43 cgcgtgtctcacacgcgcccagcttggcaaatgaaaaacggacgtgtggcccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcct 142  Q
    |||||||||||||||||||||||||| ||||||||||   |||| ||| ||| |||| |||||||||||||||||||||| |||||| ||||||||||||    
T  32362928 cgcgtgtctcacacgcgcccagcttgacaaatgaaaatgcgacgcgtgaccc-tgcggtcagactttcaacatgtttaaacctttcaccacctctctcct 32362830  T
Q  143 attctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtct 221  Q
     ||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| |||||||||||||||||||    
T  32362829 cttctctcattttcaataaccctctccaatgatttcaacaggttgaaaatgacattcaataagccattgtagatggtct 32362751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 4938750 - 4938863
Alignment:
Q  107 tttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagc 206  Q
    |||||||||||||||  |||||||||||||| |||| ||||||||||||||||| ||| || ||||| ||||||  | || |||||| ||||||| | ||    
T  4938750 tttcaacatgtttaaccctttcatcacctctttcctcttctctcattttcaataccccactacaatggtttcaatatgttcaaaatgacattcaataggc 4938849  T
Q  207 cattgtagatggtc 220  Q
    ||||||| ||||||    
T  4938850 cattgtaaatggtc 4938863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 39239101 - 39239216
Alignment:
Q  106 ctttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaag 205  Q
    ||||||||||||| ||   ||||| |||||||||||| ||| ||||| ||||||| ||  |||||||| | ||||| | ||||| |||||||||||||||    
T  39239101 ctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaag 39239200  T
Q  206 ccattgtagatggtct 221  Q
    |||||||| |||||||    
T  39239201 ccattgtaaatggtct 39239216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 13479110 - 13478987
Alignment:
Q  102 cagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaa 201  Q
    ||||||||||||||||| ||   ||||| |||||||||||| ||| ||||| ||||| | ||  ||| |||| | ||||| | ||||| ||| |||||||    
T  13479110 cagactttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaacagcctcctcaaatggtctcaacatgttgaatatgacattcaa 13479011  T
Q  202 caagccattgtagatggtcttata 225  Q
    |||||||||||| |||||||||||    
T  13479010 caagccattgtaaatggtcttata 13478987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 4218842 - 4218725
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    |||||||| |||||||||||||||  ||||   ||||||||||||||| || ||| |||||||||||||  | |||||||| |||||||| |||| ||||    
T  4218842 cccctgcg-tcagactttcaacatacttaatcatttcatcacctctcttctcttccctcattttcaatacgcttctccaatcatttcaacatattaaaaa 4218744  T
Q  192 tggcattcaacaagccatt 210  Q
    |  | ||||||||||||||    
T  4218743 ttactttcaacaagccatt 4218725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 7762610 - 7762477
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    ||||| || |||||||||||||||  ||||| |||||||| |||||||||| ||| ||||||||||||| || ||||||||||||||||| |||||||||    
T  7762610 cccctacggtcagactttcaacatacttaaacctttcatcgcctctctcctcttccctcattttcaatacccttctccaatgatttcaacatattgaaaa 7762511  T
Q  192 tggcattcaacaagccattgtagatggtcttata 225  Q
    |||||||||||||||||||||| |||||||||||    
T  7762510 tggcattcaacaagccattgtaaatggtcttata 7762477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 5144777 - 5144663
Alignment:
Q  107 tttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagc 206  Q
    |||||| ||||||||  |||||||||||||| |||| ||||||||||||||||| ||||||| |||  ||||||  ||||||||||||||||||| | ||    
T  5144777 tttcaatatgtttaaccctttcatcacctctttcctcttctctcattttcaatatccctctctaatcgtttcaatatattgaaaatggcattcaataggc 5144678  T
Q  207 cattgtagatggtct 221  Q
    ||||||| |||||||    
T  5144677 cattgtaaatggtct 5144663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 17486449 - 17486567
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    |||||||| |||||||||||||||  ||||  ||| ||||||||||||||| ||| ||||||||||||| || |||||||| |||||||| |||| ||||    
T  17486449 cccctgcg-tcagactttcaacatacttaatccttccatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaacatattaaaaa 17486547  T
Q  192 tggcattcaacaagccattg 211  Q
    | || |||||||||||||||    
T  17486548 ttgctttcaacaagccattg 17486567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 13151019 - 13150908
Alignment:
Q  107 tttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagc 206  Q
    |||||||||||||||   ||||||||||||| || | ||||||||||||||||| ||| ||  |||||||||||  ||||||||||||||||||| |  |    
T  13151019 tttcaacatgtttaaccttttcatcacctctttcatcttctctcattttcaataccccactataatgatttcaatatattgaaaatggcattcaatagac 13150920  T
Q  207 cattgtagatgg 218  Q
    ||||||| ||||    
T  13150919 cattgtatatgg 13150908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 45364123 - 45364257
Alignment:
Q  87 tgtggcccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctatt 186  Q
    |||| |||||||| |||||||||||| ||  ||||| ||||||||| ||||||||| ||| ||||||||||||| || ||||||||||||||||| ||||    
T  45364123 tgtgtcccctgcggtcagactttcaagatacttaaacctttcatcatctctctcctcttccctcattttcaatacccttctccaatgatttcaacatatt 45364222  T
Q  187 gaaaatggcattcaacaagccattgtagatggtct 221  Q
    ||||||| ||||||||||||||||||| |||||||    
T  45364223 gaaaatgacattcaacaagccattgtaaatggtct 45364257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 38352261 - 38352389
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    |||||||| |||||||||||||||  ||||  ||||||||||||||||||| ||| ||||||||||||| || |||||||| |||||||  |||||||||    
T  38352261 cccctgcg-tcagactttcaacatacttaatcctttcatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaaaatattgaaaa 38352359  T
Q  192 tggcattcaacaagccattgtagatggtct 221  Q
    | || ||||||||||||||| |||||||||    
T  38352360 ttgctttcaacaagccattggagatggtct 38352389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 20354836 - 20354964
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    |||||||| |||||||||||||||  ||||  ||||||||||||||||||| ||  ||||||||||||| || |||||||| |||||||| |||||||||    
T  20354836 cccctgcg-tcagactttcaacatacttaatcctttcatcacctctctcctctttcctcattttcaatacccttctccaatcatttcaacatattgaaaa 20354934  T
Q  192 tggcattcaacaagccattgtagatggtct 221  Q
    | || ||||| |||||||||||| ||||||    
T  20354935 ttgctttcaataagccattgtaggtggtct 20354964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 39770263 - 39770389
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    |||||||| |||||||||||||||  ||||  |||||||||| |||||||| ||  ||||||||||||| || ||| |||| |||||||| |||||||||    
T  39770263 cccctgcg-tcagactttcaacatacttaatcctttcatcacgtctctcctctttcctcattttcaatacccttcttcaatcatttcaacatattgaaaa 39770361  T
Q  192 tggcattcaacaagccattgtagatggt 219  Q
    | || ||||||||||||||| |||||||    
T  39770362 ttgctttcaacaagccattggagatggt 39770389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 38970715 - 38970823
Alignment:
Q  111 aacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccatt 210  Q
    |||||||||||  |||||||||||||  |||| ||||||||||||||||| ||| |||||||  ||||||  | ||||||||||||||||| | ||||||    
T  38970715 aacatgtttaaccctttcatcacctccgtcctcttctctcattttcaataccccactccaatagtttcaatatgttgaaaatggcattcaataggccatt 38970814  T
Q  211 gtagatggt 219  Q
    ||| |||||    
T  38970815 gtaaatggt 38970823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 224
Target Start/End: Original strand, 12117036 - 12117132
Alignment:
Q  128 catcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtcttat 224  Q
    |||||||||| |||| ||||||||||||||||| ||| || ||||| ||||||  | ||||||||||| ||||| | ||||||||| ||||||||||    
T  12117036 catcacctctttcctcttctctcattttcaataccccactacaatggtttcaatatgttgaaaatggccttcaataggccattgtaaatggtcttat 12117132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 45548907 - 45548789
Alignment:
Q  106 ctttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaag 205  Q
    ||||||||||||| ||   ||||| |||||||||||| ||| ||||| |||||||  |  |||||||  | ||||| | ||||| |||| ||||||||||    
T  45548907 ctttcaacatgttgaaccttttcaacacctctctcctcttccctcatattcaatagtctcctccaatagtctcaacatgttgaatatggtattcaacaag 45548808  T
Q  206 ccattgtagatggtcttat 224  Q
    |||||||| ||||||||||    
T  45548807 ccattgtaaatggtcttat 45548789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1905 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1905
Description:

Target: scaffold1905; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 853 - 735
Alignment:
Q  92 cccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaa 191  Q
    |||||||| ||| |||||||||||  ||||  ||||||||||||||||||| ||| ||||||||||||| || |||||||| |||||||| |||||||||    
T  853 cccctgcg-tcaaactttcaacatacttaatcctttcatcacctctctcctcttccctcattttcaatacccttctccaatcatttcaacatattgaaaa 755  T
Q  192 tggcattcaacaagccattg 211  Q
    | || |||||||||||||||    
T  754 ttgctttcaacaagccattg 735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 26653671 - 26653554
Alignment:
Q  106 ctttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaag 205  Q
    ||||||||||||| ||   ||||| |||||||||||  ||| ||||| ||||||| ||  |||||||| | ||||| | ||||| |||||||||||||||    
T  26653671 ctttcaacatgttgaaccttttcaacacctctctccccttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaag 26653572  T
Q  206 ccattgtagatggtctta 223  Q
    |||||||| |||||||||    
T  26653571 ccattgtaaatggtctta 26653554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 26759639 - 26759522
Alignment:
Q  106 ctttcaacatgtttaaagctttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaag 205  Q
    ||||||||||||| ||   ||||| |||||||||||  ||| ||||| ||||||| ||  |||||||| | ||||| | ||||| |||||||||||||||    
T  26759639 ctttcaacatgttgaaccttttcaacacctctctccccttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatggcattcaacaag 26759540  T
Q  206 ccattgtagatggtctta 223  Q
    |||||||| |||||||||    
T  26759539 ccattgtaaatggtctta 26759522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 65808 - 65713
Alignment:
Q  126 ttcatcacctctctcctattctctcattttcaataaccctctccaatgatttcaacctattgaaaatggcattcaacaagccattgtagatggtct 221  Q
    |||| |||||||||||| ||| ||||| ||||||| ||  |||||||| | ||||| | ||||| ||| |||||||||| |||||||| |||||||    
T  65808 ttcaacacctctctcctcttccctcatattcaatagcctcctccaatggtctcaacatgttgaatatgacattcaacaaaccattgtaaatggtct 65713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 106447 - 106574
Alignment:
Q  54 cacgcgcccagcttggcaaatgaaaaacggacgtgtggcccctgcgatcagactttcaacatgtttaaagctttcatcacctctctcctattctctcatt 153  Q
    ||||||| || |||||||||||||||   | || ||||||||  |  ||||| |||||||  ||| |||  |||||||||||||||||| ||  ||||||    
T  106447 cacgcgctcaacttggcaaatgaaaacgcgccgcgtggccccctccgtcagattttcaactagttgaaacatttcatcacctctctcctctttcctcatt 106546  T
Q  154 ttcaataaccctctccaatgatttcaac 181  Q
    ||||||| ||| |||||||| |||||||    
T  106547 ttcaatagccccctccaatggtttcaac 106574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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