View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_40 (Length: 250)
Name: NF11381_low_40
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 5433632 - 5433750
Alignment:
| Q |
121 |
aattcaggtttacaataacaggccggaccacctctatgtacaatcaccttcgagaaaatgagaaaaccctaaccttatcagggtttcaatcgacttcgtc |
220 |
Q |
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| T |
5433632 |
aattcaggtttacaataacagactggaccacctctatgtacaataaccttcgagaaaatgagaaaaccctaaccttatcagggtttcaatcgacttcgtc |
5433731 |
T |
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| Q |
221 |
atctgggtttccatttcat |
239 |
Q |
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| T |
5433732 |
atctgggtttccatttcat |
5433750 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 5433516 - 5433599
Alignment:
| Q |
5 |
aaaaattctgcgaccaagttcgaacacagagacatttttctcaccttctctttaccttttcttatccaagcaatagctgaagac |
88 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5433516 |
aaaaattctgcgaccaagttcgaacacaaagacatttttctcaccttctctttaccttttcttatccaagcaatagctgaagac |
5433599 |
T |
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