View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11381_low_41 (Length: 249)

Name: NF11381_low_41
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11381_low_41
NF11381_low_41
[»] chr2 (8 HSPs)
chr2 (1-245)||(15535094-15535338)
chr2 (4-245)||(15518286-15518520)
chr2 (4-231)||(15655435-15655665)
chr2 (4-231)||(15646283-15646513)
chr2 (102-226)||(15494726-15494850)
chr2 (87-231)||(15625970-15626115)
chr2 (158-233)||(15607834-15607909)
chr2 (4-44)||(15605948-15605988)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 15535094 - 15535338
Alignment:
Q  1 tgaaaaaccatatgatttttcaggcctgcaatacaaaatttggttactaagttaatgaaaccattgtnnnnnnnttaataaaatataaagttaatgtaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||       ||||||||||||||||||||||||||    
T  15535094 tgaaaaaccatatgatttttcaggcctgcaatacaaaatttggttattaagttaatgaaaccaatgtaaaaaaattaataaaatataaagttaatgtaag 15535193  T
Q  101 gtttaccaggattggtcatgatgtgattatgatcatgttctggacaatgacaagaagaatccaatggcatttgatcttgagccaagagatgcaaagctgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15535194 gtttaccaggattggtcatgatgtgattatgatcatgttctggataatgacaagaagaatccaatggcatttgatcttgagccaagagatgcaaagctgt 15535293  T
Q  201 ttctttattcacatcgcgtgcaaaagatagttctttcttctctct 245  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  15535294 ttctttattcacatcgcgtgcaaaagatagttctttcttgtctct 15535338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 15518286 - 15518520
Alignment:
Q  4 aaaaccatatgatttttcaggcctgcaatacaaaatttggttactaagttaatgaaaccattgtnnnnnnnttaataaaata-taaagttaatgtaaggt 102  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||         |||||| || |||||||||||||||||    
T  15518286 aaaaccatatgatttttcaggcctgcgatacaaaatttggttactaagttaatgaaaccaatgta--------aataaattaataaagttaatgtaaggt 15518377  T
Q  103 ttaccaggattggtcatgatgtgattatgatcatgttctggacaatgacaagaagaatccaatggcatttgatcttgagccaagagatgcaaagctgttt 202  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  15518378 ttaccaggattggtgatgatgtgattatgatcatgttctggacaatgacaagaagaatccaatggcatttgatttttagccaagagatgtaaagctgttt 15518477  T
Q  203 ctttattcacatcgcgtgcaaaagatagttctttcttctctct 245  Q
     || |||| |||| |||||||||| |||||||||||| |||||    
T  15518478 tttcattctcatcacgtgcaaaagctagttctttcttgtctct 15518520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 15655435 - 15655665
Alignment:
Q  4 aaaaccatatgatttttcaggcctgcaatacaaaatttggttact-aagttaatgaaaccattgtnnnnnnnttaataaaatataaa-gttaatgtaagg 101  Q
    |||||||  |||||||||| ||||||||||| | || |||||||| ||||||| ||||||| |||       || | |||||||||| ||||||||||||    
T  15655435 aaaaccacgtgatttttcatgcctgcaatacgagatatggttacttaagttaacgaaaccaatgtaaaagaatttaaaaaatataaaagttaatgtaagg 15655534  T
Q  102 -tttaccaggattggtcatgatgtgattatgatcatgttctggacaatgacaagaagaatccaatggcatttgatcttgagccaagagatgcaaagctgt 200  Q
     |||||||||||||||||||||| |||||||||||||||| ||||||||||||   |||||||| |||||| ||| ||||||||||||||||||||||||    
T  15655535 atttaccaggattggtcatgatgggattatgatcatgttcaggacaatgacaaccggaatccaaaggcattcgattttgagccaagagatgcaaagctgt 15655634  T
Q  201 ttctttattcacatcgcgtgcaaaagatagt 231  Q
     |||||||||||||| |||||||||| ||||    
T  15655635 ctctttattcacatcacgtgcaaaagctagt 15655665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 15646283 - 15646513
Alignment:
Q  4 aaaaccatatgatttttcaggcctgcaatacaaaatttggttact-aagttaatgaaaccattgtnnnnnnntt--aataaaatataaagttaatgtaag 100  Q
    |||||||  |||||||||| ||||||||||| |||| |||||||| ||||||| ||||||| |||       ||  || |||||| ||||||||||||||    
T  15646283 aaaaccacgtgatttttcatgcctgcaatacgaaatatggttacttaagttaacgaaaccaatgtaaaagaattttaaaaaaata-aaagttaatgtaag 15646381  T
Q  101 g-tttaccaggattggtcatgatgtgattatgatcatgttctggacaatgacaagaagaatccaatggcatttgatcttgagccaagagatgcaaagctg 199  Q
    | |||||||||||||||||||||| |||||||||||||||| ||||||||||||   |||||||| |||||| ||| |||||||||||||||||||||||    
T  15646382 gatttaccaggattggtcatgatgggattatgatcatgttcaggacaatgacaaccggaatccaaaggcattcgattttgagccaagagatgcaaagctg 15646481  T
Q  200 tttctttattcacatcgcgtgcaaaagatagt 231  Q
    | |||||||||||||| |||||||||| ||||    
T  15646482 tctctttattcacatcacgtgcaaaagctagt 15646513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 15494726 - 15494850
Alignment:
Q  102 tttaccaggattggtcatgatgtgattatgatcatgttctggacaatgacaagaagaatccaatggcatttgatcttgagccaagagatgcaaagctgtt 201  Q
    |||||||||||| ||||||||| ||| ||||||||||||  ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||     
T  15494726 tttaccaggattagtcatgatgggatgatgatcatgttccagacaatgacaacaagaatccaatggcatttgattttgagccaagagatgcaaagctgtc 15494825  T
Q  202 tctttattcacatcgcgtgcaaaag 226  Q
    |||| ||||||||| ||||||||||    
T  15494826 tcttcattcacatcacgtgcaaaag 15494850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 231
Target Start/End: Original strand, 15625970 - 15626115
Alignment:
Q  87 aaagttaatgtaagg-tttaccaggattggtcatgatgtgattatgatcatgttctggacaatgacaagaagaatccaatggcatttgatcttgagccaa 185  Q
    ||||||||||||||| |||||| ||||||||||| ||| |||||||||||||||| ||||||||||||  |||||  || |||| |  || |||||||||    
T  15625970 aaagttaatgtaaggatttaccgggattggtcattatgggattatgatcatgttcaggacaatgacaaccagaatttaaaggcaatccattttgagccaa 15626069  T
Q  186 gagatgcaaagctgtttctttattcacatcgcgtgcaaaagatagt 231  Q
    || |||||||||||| |||| ||||||||| |||||||||| ||||    
T  15626070 gatatgcaaagctgtctcttcattcacatcacgtgcaaaagctagt 15626115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 15607834 - 15607909
Alignment:
Q  158 aatccaatggcatttgatcttgagccaagagatgcaaagctgtttctttattcacatcgcgtgcaaaagatagttc 233  Q
    ||||||||  |||| ||| | |||||||||||||||||||||| |||| ||| ||||| ||| |||||| ||||||    
T  15607834 aatccaataccattagatttcgagccaagagatgcaaagctgtctcttcatttacatcacgtacaaaagctagttc 15607909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 15605948 - 15605988
Alignment:
Q  4 aaaaccatatgatttttcaggcctgcaatacaaaatttggt 44  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  15605948 aaaaccacgtgatttttcatgcctgcaatacaaaatttggt 15605988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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