View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_42 (Length: 249)
Name: NF11381_low_42
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 49713230 - 49712995
Alignment:
| Q |
1 |
tcaaagccacacctccctccagtgctgttacactcattgcaatcactagctatccaattcaacctaaacccatttctcagtgactcttcaatccctcctt |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
49713230 |
tcaaagccacaccttcctccagtgctgttacactcattgcaatcactagctatccaattcaaccgaaccccatttctcagtgactcttcaatccctcctt |
49713131 |
T |
|
| Q |
101 |
tcacaccattttccaccatcgcataaaccacttcatccctgcaattctttgacaccaagcttgcatttttatcatcaccatacaatgccacaaccgaact |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49713130 |
tcacaacattttccaccatcgcataaaccacttcatccctgcaattctttgacaccaagcttgcatttttatcatcgccatacaatgccacaaccgaact |
49713031 |
T |
|
| Q |
201 |
cgttttgttttcttcagagcaaccaattgtgttcct |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
49713030 |
cgttttgttttcttcagagcaaccaattgtgttcct |
49712995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 49655708 - 49655473
Alignment:
| Q |
1 |
tcaaagccacacctccctccagtgctgttacactcattgcaatcactagctatccaattcaacctaaacccatttctcagtgactcttcaatccctcctt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49655708 |
tcaaagccacaccttcctccagtgctgttacactcattgcaatcactagctatccaattcaacctaaacccatttctcagtgactcttcaatccctcctt |
49655609 |
T |
|
| Q |
101 |
tcacaccattttccaccatcgcataaaccacttcatccctgcaattctttgacaccaagcttgcatttttatcatcaccatacaatgccacaaccgaact |
200 |
Q |
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||||| ||||||||||| ||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49655608 |
tcacaacattttccaccctcgtattaatcacttcatccctgcaattctttgacaccaggcttgcatttttatcatcatcatacaatgccacaaccgaact |
49655509 |
T |
|
| Q |
201 |
cgttttgttttcttcagagcaaccaattgtgttcct |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
49655508 |
cgttttgttttcttcagagcaaccaattgtgttcct |
49655473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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