View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_5 (Length: 646)
Name: NF11381_low_5
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 134 - 577
Target Start/End: Original strand, 10565992 - 10566433
Alignment:
| Q |
134 |
aaaataataagtatatataccagcaaaagcttgttggtagtttttcccatagcagaaagaacaacaatcggtctctcctccggaaaactcataaccaatc |
233 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
10565992 |
aaaataataagtata--taccagcaaaagcttgttagtagtttttcccatagcagaaagaactacaataggcctctcctccggaaaactcataaccaatc |
10566089 |
T |
|
| Q |
234 |
cagcaacttccatcatcctctccgccgacgcaaccgacgaaccaccaaatttcatcacacatgtataactcctctttatccctccttcatctccttcttc |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10566090 |
cagcaacttccatcatcctctccgccgacgcaaccgacgaaccaccaaatttcatcacacatgtataactcctctttatccctccttcatctccttcttc |
10566189 |
T |
|
| Q |
334 |
ctcaaccacactcctcccattctcaatcacgtgcttctccaacacattgcacgtgaccttcaccaccgcttttttcggaaattcgtaaccgaataagttt |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
10566190 |
ctcaaccacactcctcccattctcaatcacgtgcttctccaacacattgcacgtgaccttcaccgccgcttttttcggaaattcgtaaccgaataaattt |
10566289 |
T |
|
| Q |
434 |
gtcgttctctgctgttgctgccacgtggcgagtggtggaagaagaaggttgggtttgacattattataataacaacgaaattgtaacaagtttgttgctg |
533 |
Q |
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| T |
10566290 |
gtcgttctctgctgttgctgccacgtggcgagtggtggaagaagaaggttgggtttgacattattataataacaacgaaattgtaacaagtttgttgctg |
10566389 |
T |
|
| Q |
534 |
ccatgaatggaatatgaagaaactgtgaaaaaactgaatctaac |
577 |
Q |
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| T |
10566390 |
ccatgaatggaatatgaagaaactgtgaaaaaactgaatctaac |
10566433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 10565848 - 10565977
Alignment:
| Q |
16 |
gacatcaataataatgttaaaaatattgaagtgattactttcaatgcatgcgaatgacacgtatctgacgctgaacacgtcttcaatcataagtatcagt |
115 |
Q |
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| T |
10565848 |
gacatcaataataatgttaaaaatattgaagtgattactttcaatgc----gaatgacacgtatctgacactaaacacgtcttcgatcataagtatcagt |
10565943 |
T |
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| Q |
116 |
gtaacattaaaagtaaacaaaataataagtatat |
149 |
Q |
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| T |
10565944 |
ataacattaaaagtaaacaaaataataagtatat |
10565977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 628
Target Start/End: Original strand, 10566454 - 10566484
Alignment:
| Q |
598 |
cttctgaagctcgatctgtggaaatgaagag |
628 |
Q |
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| T |
10566454 |
cttctgaagctcgatctgtggaaatgaagag |
10566484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 32328815 - 32328741
Alignment:
| Q |
150 |
ataccagcaaaagcttgttggtagtttttcccatagcagaaagaacaacaatcggtctctcctccggaaaactca |
224 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||| ||| || ||||| || |||||||||| |
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| T |
32328815 |
ataccagtaaaagtttgttggtagtttttcccatagcagaaagaacaataataggcctctcttcaggaaaactca |
32328741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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