View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11381_low_6 (Length: 617)
Name: NF11381_low_6
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11381_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 29220470 - 29220962
Alignment:
| Q |
18 |
acatcacttgaaggtgtatacgtcgtcttcgaagtggtccacgactcaaattattggccccggtataaaggtttgtcaatatgccacaatccaaccatgt |
117 |
Q |
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| T |
29220470 |
acattacttgaaggtgtatacgtcgtctttgaagtggtccacgactcaaattattggcccgagtataaaggtttgtcaatatgccacaatccaaccatgc |
29220569 |
T |
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| Q |
118 |
gaaggttaaagaaagatttcccaaacaatactcgcattacgattgaaatggacgccttagaaaaacagtcaagataaatatgaactgtgtcgaatgtccg |
217 |
Q |
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| T |
29220570 |
gaaggttaaagaaagatttcccaaacaatagtcgcattacgattgaaatggacgccttagaaaaacagttaagataaatatgaactgtgtcgaatgtccg |
29220669 |
T |
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| Q |
218 |
gacatatccgcaaatattatccttagaaaattggctttgctacttagttggaagtagannnnnnnagatgtcacgattagcatcgtttcaatattctttg |
317 |
Q |
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| T |
29220670 |
gtcatatccgcaaatattatccttagaaaattggctttgctacttagttggaagtagatttttttagatgtcacgattagcatcgttccaatattctttg |
29220769 |
T |
|
| Q |
318 |
aggctccaacagacaagaggcttcaacagcaacaagaaatggttttctataatgaggttaatgtagttggtgcagactctaatggatcgtgttggtctat |
417 |
Q |
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| T |
29220770 |
aggctccaacagacaagaggcttcaacagcaacaagaaatggttttctataatgaggttaatgtagttggtgcagactctaatggatcgtgttggtctat |
29220869 |
T |
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| Q |
418 |
tctaacttgctattcaacatttacttgcccaaataataaaattgtgttaggaaaataaaaatattgtagaaatattaaacctgcaataacaga |
510 |
Q |
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| T |
29220870 |
tctaccttgctattcaacatttacttgcccaaataataaaattgtgttaggaaaataaaaatactgtagaaatattaaacctacaataacaga |
29220962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 508 - 600
Target Start/End: Original strand, 29221041 - 29221136
Alignment:
| Q |
508 |
agataaaaacaactggtctatattagagagaccaaactcttcattcagacgttaaaata---tataccattacaatcaaaatcctaccctttatct |
600 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29221041 |
agataaaaacaactggtctatattagagagaccaaacacttcattcagatgttaaaatatagtataccattacaatcaaaatcctaccctttatct |
29221136 |
T |
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