View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11381_low_8 (Length: 602)

Name: NF11381_low_8
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11381_low_8
NF11381_low_8
[»] chr8 (19 HSPs)
chr8 (292-544)||(28263694-28263948)
chr8 (1-201)||(28264038-28264238)
chr8 (1-162)||(28304094-28304255)
chr8 (1-168)||(28289498-28289665)
chr8 (5-162)||(28293892-28294049)
chr8 (1-127)||(28279633-28279759)
chr8 (540-590)||(28260349-28260399)
chr8 (334-401)||(2687692-2687759)
chr8 (341-398)||(24578852-24578909)
chr8 (334-399)||(14130115-14130180)
chr8 (334-401)||(16598198-16598266)
chr8 (334-401)||(16598116-16598183)
chr8 (334-377)||(24577624-24577667)
chr8 (334-401)||(24730982-24731049)
chr8 (334-377)||(30440687-30440730)
chr8 (338-399)||(20693753-20693814)
chr8 (334-371)||(26377981-26378018)
chr8 (334-394)||(30442477-30442537)
chr8 (334-401)||(2609567-2609634)
[»] chr4 (14 HSPs)
chr4 (334-401)||(13990749-13990816)
chr4 (292-401)||(7633985-7634097)
chr4 (335-401)||(18689593-18689659)
chr4 (334-395)||(13991457-13991518)
chr4 (334-398)||(10494853-10494917)
chr4 (334-401)||(9260523-9260590)
chr4 (334-401)||(21433635-21433702)
chr4 (331-398)||(53477289-53477356)
chr4 (292-343)||(2880069-2880120)
chr4 (335-401)||(18657114-18657180)
chr4 (334-362)||(7635240-7635268)
chr4 (334-362)||(17255009-17255037)
chr4 (482-550)||(26473662-26473729)
chr4 (346-394)||(50519224-50519272)
[»] chr7 (18 HSPs)
chr7 (292-401)||(8916449-8916561)
chr7 (334-397)||(11000902-11000965)
chr7 (331-398)||(18790247-18790314)
chr7 (298-395)||(1786594-1786694)
chr7 (341-401)||(24840100-24840160)
chr7 (334-399)||(1690205-1690270)
chr7 (298-398)||(11228892-11228995)
chr7 (334-401)||(1365621-1365689)
chr7 (337-401)||(1369758-1369822)
chr7 (334-401)||(5934554-5934621)
chr7 (343-401)||(11228679-11228738)
chr7 (334-401)||(35814821-35814888)
chr7 (341-401)||(27142623-27142683)
chr7 (334-393)||(4955944-4956003)
chr7 (298-398)||(6451825-6451928)
chr7 (483-544)||(31412559-31412620)
chr7 (334-362)||(4133400-4133428)
chr7 (334-362)||(8915280-8915308)
[»] scaffold0090 (1 HSPs)
scaffold0090 (298-401)||(15136-15241)
[»] chr2 (11 HSPs)
chr2 (298-401)||(5171657-5171763)
chr2 (298-401)||(33051529-33051635)
chr2 (334-401)||(23457596-23457663)
chr2 (334-401)||(28737787-28737854)
chr2 (486-542)||(19548183-19548239)
chr2 (337-401)||(32162041-32162106)
chr2 (334-401)||(4184878-4184946)
chr2 (331-398)||(19582057-19582124)
chr2 (334-371)||(1218389-1218426)
chr2 (334-401)||(12966426-12966494)
chr2 (334-399)||(36648915-36648982)
[»] chr1 (14 HSPs)
chr1 (334-401)||(12944066-12944133)
chr1 (334-396)||(8967881-8967943)
chr1 (334-401)||(50713663-50713730)
chr1 (334-401)||(9030966-9031034)
chr1 (292-392)||(9195023-9195126)
chr1 (334-401)||(8221438-8221505)
chr1 (298-401)||(10927105-10927209)
chr1 (334-401)||(10925690-10925757)
chr1 (292-377)||(50335772-50335858)
chr1 (331-396)||(8965852-8965917)
chr1 (337-401)||(28660818-28660883)
chr1 (486-538)||(11199966-11200018)
chr1 (346-401)||(31915511-31915567)
chr1 (486-538)||(50391954-50392006)
[»] scaffold0251 (1 HSPs)
scaffold0251 (334-404)||(9652-9722)
[»] chr5 (3 HSPs)
chr5 (334-398)||(18252366-18252430)
chr5 (339-401)||(26140298-26140360)
chr5 (486-514)||(8215124-8215152)
[»] chr3 (7 HSPs)
chr3 (334-398)||(1320124-1320188)
chr3 (334-401)||(2472760-2472828)
chr3 (482-538)||(37626644-37626700)
chr3 (482-552)||(43481617-43481687)
chr3 (331-372)||(52708801-52708842)
chr3 (558-590)||(21829192-21829224)
chr3 (292-356)||(33528312-33528376)
[»] chr6 (8 HSPs)
chr6 (300-394)||(34373865-34373962)
chr6 (334-401)||(12882072-12882140)
chr6 (480-538)||(15092102-15092160)
chr6 (334-401)||(11658881-11658949)
chr6 (558-590)||(17860508-17860540)
chr6 (334-394)||(24443150-24443210)
chr6 (334-401)||(27822190-27822258)
chr6 (341-401)||(33615576-33615636)
[»] scaffold0024 (1 HSPs)
scaffold0024 (334-400)||(145683-145750)
[»] scaffold0240 (1 HSPs)
scaffold0240 (334-396)||(15997-16059)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 292 - 544
Target Start/End: Complemental strand, 28263948 - 28263694
Alignment:
Q  292 cctagcatttaagcttaacatttgtaacctaacagacagttttt-cattcaataatattttagagagttttcacaatttctgctggactctagaacccta 390  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28263948 cctagtatttaagcttaacagttgtaacctaacagacagttttttcattcaataatattttagagagttttcataatttctgctggactctagaacccta 28263849  T
Q  391 ttttcacaagtgtttt-gctattaataccatagttttatagttgttccctcgttccttccattgaagtcatgtttcacaacaacacatatttacctaaaa 489  Q
    ||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||    
T  28263848 ttttcacaagtttttttgctattaatatcatagttttatagttgttccctcattccttccattgatgtcatgtttcacaacaacacatatttacctgaaa 28263749  T
Q  490 ccttaaaacattagatatatgaatcacctctattatatatccaacatttcctcca 544  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28263748 ccttaaaacattagatatatgaatcacctcttttatatatccaacatttcctcca 28263694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 28264238 - 28264038
Alignment:
Q  1 attatggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattttgaggttgccttgccaaatcttccgccaaag 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  28264238 attatggtgtgctcatccggatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattttgaggttgcattgccaaatcttccaccaaag 28264139  T
Q  101 aagcctgttgcaacttatcttgctcctgcaacgcctataagctcagaagaagcttccataacaacaagcctagagaagggtcgttaatttcgatgcaggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  28264138 aagcctgttgcaacttatcttgctcctgcaacgcctataagctcagaagaagcttccataaccacaagcctagagaatggtcgttaatttcgatgcaggg 28264039  T
Q  201 g 201  Q
    |    
T  28264038 g 28264038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 28304255 - 28304094
Alignment:
Q  1 attatggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattttgaggttgccttgccaaatcttccgccaaag 100  Q
    |||||||||||||||||||||||| ||| ||||||||||||||   ||||| |||||||||||||||||||||||| || ||||||||||||||||||||    
T  28304255 attatggtgtgctcatcctgatgttagtctaagaccatcaattagacaagccattcaagtgcttaattttgaggtttccatgccaaatcttccgccaaag 28304156  T
Q  101 aagcctgttgcaacttatcttgctcctgcaacgcctataagctcagaagaagcttccataac 162  Q
    | ||| |||||||| |||| ||||||  || |  || ||||||| | |||||||||||||||    
T  28304155 aggccagttgcaacctatcatgctcccacaccatctgtaagctccgtagaagcttccataac 28304094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 28289498 - 28289665
Alignment:
Q  1 attatggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattttgaggttgccttgccaaatcttccgccaaag 100  Q
    |||||||||||||||||||||||||||| |||||||||| |||   ||||||||||||||||| ||||||||| |||| |||||||||||||| |  ||     
T  28289498 attatggtgtgctcatcctgatgtaagtctaagaccatccattagacaagcaattcaagtgctaaattttgagattgctttgccaaatcttcccctgaat 28289597  T
Q  101 aagcctgttgcaacttatcttgctcctgcaacgcctataagctcagaagaagcttccataacaacaag 168  Q
    | |||| ||||||| |||| ||||||| || || || ||||||| | ||||||||||||||| |||||    
T  28289598 aggcctattgcaacctatcatgctcctacaccgactctaagctcggtagaagcttccataaccacaag 28289665  T

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Target: chr8; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 28294049 - 28293892
Alignment:
Q  5 tggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattttgaggttgccttgccaaatcttccgccaaagaagc 104  Q
    |||||||||||||||||||| ||| | |||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  28294049 tggtgtgctcatcctgatgttagtcttagaccatcgattagacaagcaattcaagtgcttaattttgaggttgccttgccaaatcttccaccaaagaggc 28293950  T
Q  105 ctgttgcaacttatcttgctcctgcaacgcctataagctcagaagaagcttccataac 162  Q
    | |||||||| |||| || |||| || |  |  ||||||| | |||||||||||||||    
T  28293949 cagttgcaacctatcatgttccttcatcatcggtaagctctgtagaagcttccataac 28293892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 28279633 - 28279759
Alignment:
Q  1 attatggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattttgaggttgccttgccaaatcttccgccaaag 100  Q
    ||||||||||| |||||||||||| ||| |||||||||| |||   |||||||| |||||||||||||||||||||| | |||||||| | || ||||||    
T  28279633 attatggtgtgttcatcctgatgttagtctaagaccatcgattagacaagcaatccaagtgcttaattttgaggttgacatgccaaatttgccaccaaag 28279732  T
Q  101 aagcctgttgcaacttatcttgctcct 127  Q
    |  || |||||||| |||| |||||||    
T  28279733 agaccagttgcaacctatcatgctcct 28279759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 590
Target Start/End: Complemental strand, 28260399 - 28260349
Alignment:
Q  540 ctccaatcctagttgatctcaatggtttgtggaacattttgtattattttc 590  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28260399 ctccaatcctagttgatctcaatggttggtggaacattttgtattattttc 28260349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 2687692 - 2687759
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||| | ||||||||| ||||||||  |||| |||||||||||||||||||||||    
T  2687692 ttcattcaataatatttcaaagagttttctcaatttcttgtggattctagaaccctattttcacaagt 2687759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 398
Target Start/End: Complemental strand, 24578909 - 24578852
Alignment:
Q  341 aataatattttagagagttttcacaatttctgctggactctagaaccctattttcaca 398  Q
    |||||||||||||||||||||||||||||||  |||| || |||||||||||||||||    
T  24578909 aataatattttagagagttttcacaatttctagtggattccagaaccctattttcaca 24578852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 14130115 - 14130180
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaa 399  Q
    |||||||||||||||||| |||||||||| ||||||||| |||| ||  ||||| |||||||||||    
T  14130115 ttcattcaataatattttggagagttttctcaatttctggtggattccggaaccttattttcacaa 14130180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 16598198 - 16598266
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaattt-ctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||||||||| |||||| ||| || | | | |||||||||||||||||||    
T  16598198 ttcattcaataatattttagagagttttctcaatttactggtgtattttggaaccctattttcacaagt 16598266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 16598116 - 16598183
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||||||||| || |||||| || | |   |||||||||||||||||||    
T  16598116 ttcattcaataatattttagagagttttctcagtttctggtgtatttcggaaccctattttcacaagt 16598183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 24577667 - 24577624
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctgga 377  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  24577667 ttcattcaataatattttagagagttttctcaatttctggtgga 24577624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 24730982 - 24731049
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||||||||| |||||| || |||| ||   || |||||||||||||||    
T  24730982 ttcattcaataatattttagagagttttctcaatttttgatggattccgaaatcctattttcacaagt 24731049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 377
Target Start/End: Original strand, 30440687 - 30440730
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctgga 377  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  30440687 ttcattcaataatattttagagagttttctcaatttctggtgga 30440730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 20693753 - 20693814
Alignment:
Q  338 ttcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaa 399  Q
    |||||||||| |||||||||||||| ||||||||| |||| ||  ||||| |||||||||||    
T  20693753 ttcaataatactttagagagttttctcaatttctgatggattccggaaccatattttcacaa 20693814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 26377981 - 26378018
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttct 371  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  26377981 ttcattcaataatattttagagagttttctcaatttct 26378018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 30442477 - 30442537
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    ||||||||||||||||||| ||||||||| ||||||||  |||| | ||||| ||||||||    
T  30442477 ttcattcaataatattttaaagagttttctcaatttctaatggattttagaatcctatttt 30442537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 2609634 - 2609567
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||| |||||| |||  ||||||||| || | |||  ||||||||||||||||||    
T  2609634 ttcattcaataatatttcagagagctttatcaatttctggtgaattctgtaaccctattttcacaagt 2609567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 13990816 - 13990749
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||||||||  ||||||||| |||| || ||||||||||||||||||||    
T  13990816 ttcattcaataatattttagagagttttttcaatttctgatggattccagaaccctattttcacaagt 13990749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 401
Target Start/End: Original strand, 7633985 - 7634097
Alignment:
Q  292 cctagcatttaagcttaacatttgtaacctaacag---acagtttttcattcaataatattttagagagttttcacaatttctgctggactctagaaccc 388  Q
    ||||| |||||||||||||| ||||||| ||| ||   ||  || ||||||||||||||||||||||||||||| ||||||||| |||| || ||||| |    
T  7633985 cctagtatttaagcttaacagttgtaacataagaggaaacttttattcattcaataatattttagagagttttctcaatttctggtggattccagaactc 7634084  T
Q  389 tattttcacaagt 401  Q
    ||||| |||||||    
T  7634085 tatttccacaagt 7634097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 401
Target Start/End: Complemental strand, 18689659 - 18689593
Alignment:
Q  335 tcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||| ||||||||| ||||||||| |||| |||  ||||||||||| ||||||    
T  18689659 tcattcaataatattttatagagttttctcaatttctggtggattctgcaaccctatttttacaagt 18689593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 13991518 - 13991457
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttc 395  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||| || |||||| |||||||    
T  13991518 ttcattcaataatattttagagagttttctcaaattctggtggattccagaaccttattttc 13991457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 10494853 - 10494917
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcaca 398  Q
    ||||||||||||||||||||||||||||| ||||||||| || | ||  |||| |||||||||||    
T  10494853 ttcattcaataatattttagagagttttctcaatttctggtgaattccggaactctattttcaca 10494917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 9260523 - 9260590
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||| |||||||||| ||||||| ||||||||| |||| |||  |||||||||||| |||||    
T  9260523 ttcattcaattatattttagatagttttctcaatttctggtggattctgaaaccctattttcgcaagt 9260590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 21433702 - 21433635
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||| ||||| |||||| || || | ||| |||||||||||||| ||||    
T  21433702 ttcattcaataatattttagagaattttctcaatttatgatgaattctggaaccctattttcataagt 21433635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 398
Target Start/End: Complemental strand, 53477356 - 53477289
Alignment:
Q  331 tttttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcaca 398  Q
    ||||||||||||||   ||||||||||||||| ||||||||| |||| |||| ||||| |||||||||    
T  53477356 tttttcattcaatatatttttagagagttttctcaatttctggtggattctaaaaccccattttcaca 53477289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 2880069 - 2880120
Alignment:
Q  292 cctagcatttaagcttaacatttgtaacctaacagacagtttttcattcaat 343  Q
    ||||| |||||||| ||||| ||||| | |||||||||||||||||||||||    
T  2880069 cctagtatttaagcgtaacagttgtagcttaacagacagtttttcattcaat 2880120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 401
Target Start/End: Complemental strand, 18657180 - 18657114
Alignment:
Q  335 tcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||| ||||||||| ||||||| | |||| |||  || |||||||| ||||||    
T  18657180 tcattcaataatattttatagagttttctcaatttccggtggattctgaaatcctatttttacaagt 18657114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 7635240 - 7635268
Alignment:
Q  334 ttcattcaataatattttagagagttttc 362  Q
    |||||||||||||||||||||||||||||    
T  7635240 ttcattcaataatattttagagagttttc 7635268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 17255037 - 17255009
Alignment:
Q  334 ttcattcaataatattttagagagttttc 362  Q
    |||||||||||||||||||||||||||||    
T  17255037 ttcattcaataatattttagagagttttc 17255009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 550
Target Start/End: Original strand, 26473662 - 26473729
Alignment:
Q  482 acctaaaaccttaaaacattagatatatgaatcacctctattatatatccaacatttcctccaatccta 550  Q
    ||||||||||||||||||| || ||||||| || ||||| ||||||||||||  ||| ||||| |||||    
T  26473662 acctaaaaccttaaaacatcaggtatatgagtc-cctctcttatatatccaatgttttctccattccta 26473729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 50519272 - 50519224
Alignment:
Q  346 tattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    ||||||||||||||||| ||||||||  |||| || |||||||||||||    
T  50519272 tattttagagagttttctcaatttctagtggattccagaaccctatttt 50519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 292 - 401
Target Start/End: Complemental strand, 8916561 - 8916449
Alignment:
Q  292 cctagcatttaagcttaacatttgtaacctaacag---acagtttttcattcaataatattttagagagttttcacaatttctgctggactctagaaccc 388  Q
    ||||| |||||||||||||| ||||||| ||| ||   ||  || ||||||||||||||||||||||||||||| ||||||||| |||| || ||||| |    
T  8916561 cctagtatttaagcttaacagttgtaacataagaggaaacttttattcattcaataatattttagagagttttctcaatttctggtggattccagaactc 8916462  T
Q  389 tattttcacaagt 401  Q
    ||||| |||||||    
T  8916461 tatttccacaagt 8916449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 11000965 - 11000902
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcac 397  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| ||  |||||||||||||||    
T  11000965 ttcattcaataatattttagagagttttcccaatttctggtggattcctgaaccctattttcac 11000902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 331 - 398
Target Start/End: Complemental strand, 18790314 - 18790247
Alignment:
Q  331 tttttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcaca 398  Q
    ||||||||||| |||||||||||||||||||| ||||||||| |||| |||| || ||||||||||||    
T  18790314 tttttcattcagtaatattttagagagttttctcaatttctggtggattctaaaatcctattttcaca 18790247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 1786594 - 1786694
Alignment:
Q  298 atttaagcttaacatttgtaacctaacag---acagtttttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    |||||||||||||| ||||| ||||| ||   ||  || |||||| |||||||||||||||||||||| ||||||||| |||| ||| ||||||||||||    
T  1786594 atttaagcttaacagttgtagcctaagaggaaacttttattcattaaataatattttagagagttttcgcaatttctgatggattctggaaccctatttt 1786693  T
Q  395 c 395  Q
    |    
T  1786694 c 1786694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 24840100 - 24840160
Alignment:
Q  341 aataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||||| ||||||||| |||| ||  |||||||||||||||||||    
T  24840100 aataatattttagagagttttctcaatttctggtggattccggaaccctattttcacaagt 24840160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 399
Target Start/End: Complemental strand, 1690270 - 1690205
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaa 399  Q
    |||||| |||| ||||||||||| ||||| ||||||||| |||| || ||||||||||||||||||    
T  1690270 ttcattaaatactattttagagaattttctcaatttctgatggattccagaaccctattttcacaa 1690205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 398
Target Start/End: Original strand, 11228892 - 11228995
Alignment:
Q  298 atttaagcttaacatttgtaacctaacagacagttttt---cattcaataatattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    |||||||||||||||||||| | ||| || ||  ||||   || |||||||||||||||||||||||  ||||||||| |||| ||| ||||||| ||||    
T  11228892 atttaagcttaacatttgtagcataagaggcaacttttattcactcaataatattttagagagttttatcaatttctggtggattctggaaccctttttt 11228991  T
Q  395 caca 398  Q
    ||||    
T  11228992 caca 11228995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 1365621 - 1365689
Alignment:
Q  334 ttcattcaataatattttagagag-ttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||||||| ||||| |||||| || |||| | | |||||||||||||||||||    
T  1365621 ttcattcaataatattttagagagtttttctcaatttttggtggattatggaaccctattttcacaagt 1365689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 1369758 - 1369822
Alignment:
Q  337 attcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||| ||||||||| ||||||||| |||| ||  |||||||||||| ||||||    
T  1369758 attcaataatattttatagagttttctcaatttctggtggattccggaaccctattttaacaagt 1369822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 5934554 - 5934621
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||| ||||| ||||||||  |||| |||  || |||||||||||||||    
T  5934554 ttcattcaataatattttagagaattttctcaatttctaatggattctgaaatcctattttcacaagt 5934621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 11228679 - 11228738
Alignment:
Q  343 taatattttagagagttttcacaa-tttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||| ||| |||||| |||| ||||||||||||||| |||||||    
T  11228679 taatattttagagagttttctcaattttctggtggattctagaaccctatttccacaagt 11228738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 35814821 - 35814888
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||||||||| |||||| || | || || |||||| |||||| ||||||    
T  35814821 ttcattcaataatattttagagagttttctcaatttatggtagattcaagaaccttatttttacaagt 35814888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 27142623 - 27142683
Alignment:
Q  341 aataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||| ||||||||||| ||||||||| |||  ||  |||||||||||||||||||    
T  27142623 aataatatttcagagagttttctcaatttctggtggtttcaggaaccctattttcacaagt 27142683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 4956003 - 4955944
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattt 393  Q
    |||||||||||||||||||| |||||||| ||||||||  |||| ||||| || ||||||    
T  4956003 ttcattcaataatattttagggagttttctcaatttctaatggattctaggactctattt 4955944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 6451928 - 6451825
Alignment:
Q  298 atttaagcttaacatttgtaacctaacagacagtttt---tcattcaataatattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    |||||| ||||||| ||||| ||||| |||||  |||   |||||||||||||||||||||||||||  |||||| || |||| ||   |||| ||||||    
T  6451928 atttaaacttaacagttgtagcctaagagacaactttaattcattcaataatattttagagagttttttcaatttttgttggattccgaaaccttatttt 6451829  T
Q  395 caca 398  Q
    ||||    
T  6451828 caca 6451825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 31412620 - 31412559
Alignment:
Q  483 cctaaaaccttaaaacattagatatatgaatcacctctattatatatccaacatttcctcca 544  Q
    |||||| |||||| ||||||||||||||||  |||||| ||| ||||||||| |||| ||||    
T  31412620 cctaaatccttaagacattagatatatgaactacctctcttacatatccaacctttcatcca 31412559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 4133428 - 4133400
Alignment:
Q  334 ttcattcaataatattttagagagttttc 362  Q
    |||||||||||||||||||||||||||||    
T  4133428 ttcattcaataatattttagagagttttc 4133400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Complemental strand, 8915308 - 8915280
Alignment:
Q  334 ttcattcaataatattttagagagttttc 362  Q
    |||||||||||||||||||||||||||||    
T  8915308 ttcattcaataatattttagagagttttc 8915280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 298 - 401
Target Start/End: Complemental strand, 15241 - 15136
Alignment:
Q  298 atttaagcttaacatttgtaacctaac-agacagttt-ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttc 395  Q
    |||||||||||||| ||||| |||||  |||  |||| ||||||||||||||||||||||  ||||| ||||||||| |||| ||||||||||||||||     
T  15241 atttaagcttaacaattgtagcctaaggagaacgtttattcattcaataatattttagaggattttctcaatttctggtggattctagaaccctattttt 15142  T
Q  396 acaagt 401  Q
    ||||||    
T  15141 acaagt 15136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 401
Target Start/End: Complemental strand, 5171763 - 5171657
Alignment:
Q  298 atttaagcttaacatttgtaacctaacagacagttttt---cattcaataatattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    |||||||||||||| |||||  |||| ||||| |||||   |||| |||||||||||||||||||||| ||||||||  |||| ||| ||||||||||||    
T  5171763 atttaagcttaacagttgtagtctaagagacaatttttattcattaaataatattttagagagttttctcaatttctagtggattcttgaaccctatttt 5171664  T
Q  395 cacaagt 401  Q
     ||||||    
T  5171663 tacaagt 5171657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 401
Target Start/End: Original strand, 33051529 - 33051635
Alignment:
Q  298 atttaagcttaacatttgtaacctaacagacagttt---ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    |||||||||||||| |||||  |||| |||||  ||   ||||||||||||||||||||||||||||| ||||||||  |||| || |||||||||||||    
T  33051529 atttaagcttaacaattgtagtctaagagacaacttatattcattcaataatattttagagagttttctcaatttctagtggattccagaaccctatttt 33051628  T
Q  395 cacaagt 401  Q
    || ||||    
T  33051629 caaaagt 33051635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 23457596 - 23457663
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||||||||| |||||| || |||| ||  |||||||||||||||||||    
T  23457596 ttcattcaataatattttagagagttttctcaatttttggtggattccggaaccctattttcacaagt 23457663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 28737787 - 28737854
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||  ||| ||||||||||||||    
T  28737787 ttcattcaataatattttagagagttttctcaatttctgttggattctgaaactctattttcacaagt 28737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 542
Target Start/End: Complemental strand, 19548239 - 19548183
Alignment:
Q  486 aaaaccttaaaacattagatatatgaatcacctctattatatatccaacatttcctc 542  Q
    |||||||||| ||||||||||||||  || ||||| |||||||||||||||||||||    
T  19548239 aaaaccttaagacattagatatatgggtctcctctcttatatatccaacatttcctc 19548183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 401
Target Start/End: Complemental strand, 32162106 - 32162041
Alignment:
Q  337 attcaataatattttagaga-gttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||| |||||| || |||||| |||| ||  |||||||||||||||||||    
T  32162106 attcaataatattttagagaagttttctcagtttctggtggattcctgaaccctattttcacaagt 32162041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 4184878 - 4184946
Alignment:
Q  334 ttcattcaataatattttagagag-ttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||||||| ||||| ||||||||  |||| ||   ||||||||||||||||||    
T  4184878 ttcattcaataatattttagagagtttttctcaatttctcgtggattccgaaaccctattttcacaagt 4184946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 398
Target Start/End: Original strand, 19582057 - 19582124
Alignment:
Q  331 tttttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcaca 398  Q
    ||||| |||||||||||||||||||||||||  ||||||||  || | || |||||||| ||||||||    
T  19582057 ttttttattcaataatattttagagagttttttcaatttctagtgaattcgagaacccttttttcaca 19582124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 1218426 - 1218389
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttct 371  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  1218426 ttcattcaataatattttagagaattttctcaatttct 1218389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 12966426 - 12966494
Alignment:
Q  334 ttcattcaataatattttagagag-ttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||| ||||||||||||||||||| ||||| |||||| || |||| |   |||||||||||||||||||    
T  12966426 ttcaatcaataatattttagagagtttttctcaatttttggtggatttcggaaccctattttcacaagt 12966494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 36648915 - 36648982
Alignment:
Q  334 ttcattcaataatattttagagag--ttttcacaatttctgctggactctagaaccctattttcacaa 399  Q
    |||| |||||||||||||||||||  |||||  |||||||| |||| || ||||||||||||| ||||    
T  36648915 ttcaatcaataatattttagagagttttttcttaatttctggtggattccagaaccctatttttacaa 36648982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 12944066 - 12944133
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||| || ||||||||||||| ||||||    
T  12944066 ttcattcaatattattttagagagttttctcaatttctggtggattccagaaccctatttttacaagt 12944133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 396
Target Start/End: Complemental strand, 8967943 - 8967881
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttca 396  Q
    ||||||||||||||||| |||||||||||||||||| || |||| ||| ||||||||||||||    
T  8967943 ttcattcaataatatttcagagagttttcacaatttttggtggattctggaaccctattttca 8967881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 50713663 - 50713730
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||| |||||||||| ||||||||| |||| ||   ||||||||||||||||||    
T  50713663 ttcattcaataatatttttgagagttttctcaatttctggtggattccgaaaccctattttcacaagt 50713730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 9030966 - 9031034
Alignment:
Q  334 ttcattcaataatattttagag-agttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||||| ||||||| |||||| || |||| |||| ||||||||||||| ||||    
T  9030966 ttcattcaataatattttagagaagttttctcaatttatggtggattctacaaccctattttcataagt 9031034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 9195126 - 9195023
Alignment:
Q  292 cctagcatttaagcttaacatttgtaacctaacagac-agtttt--tcattcaataatattttagagagttttcacaatttctgctggactctagaaccc 388  Q
    ||||| |||||||||||||||||||| ||||| |||| | ||||  ||||||||||||| |||||||||||||  |||||| || |||| | | ||||||    
T  9195126 cctagtatttaagcttaacatttgtagcctaagagacgacttttattcattcaataatactttagagagttttttcaatttttggtggattattgaaccc 9195027  T
Q  389 tatt 392  Q
    ||||    
T  9195026 tatt 9195023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 8221438 - 8221505
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||| |||||| | ||||||||| ||||||||| |||| || ||||||||||||||| ||||    
T  8221438 ttcattcaatgatatttcaaagagttttctcaatttctggtggattccagaaccctattttcataagt 8221505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 298 - 401
Target Start/End: Original strand, 10927105 - 10927209
Alignment:
Q  298 atttaagcttaacatttgtaacctaacagacagttttt---cattcaataatattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    |||||| ||||||| ||||| ||||| |||||  ||||   |||| |||||||||||||||||||||| ||||||||| |||| ||  ||||||  ||||    
T  10927105 atttaatcttaacaattgtagcctaagagacaacttttattcattaaataatattttagagagttttctcaatttctggtggattccggaaccc--tttt 10927202  T
Q  395 cacaagt 401  Q
    |||||||    
T  10927203 cacaagt 10927209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 10925690 - 10925757
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    ||||||||||||||||||||||||||||  ||||||  | |||| || |||||| |||||| ||||||    
T  10925690 ttcattcaataatattttagagagttttttcaattttcggtggattccagaaccatatttttacaagt 10925757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 377
Target Start/End: Original strand, 50335772 - 50335858
Alignment:
Q  292 cctagcatttaagcttaacatttgtaacctaacagacagtttttcattcaataatattttagag-agttttcacaatttctgctgga 377  Q
    ||||| ||||||||||||||||||||  |||| | ||||||||||||| ||||| ||| | ||| | ||||| ||||||||| ||||    
T  50335772 cctagtatttaagcttaacatttgtagtctaagatacagtttttcatttaataaaattattgagaacttttctcaatttctggtgga 50335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 8965917 - 8965852
Alignment:
Q  331 tttttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttca 396  Q
    ||||| |||||||||||||| | || |||||| ||||||||| |||| |  |||||||||||||||    
T  8965917 ttttttattcaataatatttcatagtgttttctcaatttctgatggatttcagaaccctattttca 8965852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 401
Target Start/End: Complemental strand, 28660883 - 28660818
Alignment:
Q  337 attcaataatattttagagagttttc-acaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||||||||| | | |||||| |||| |   |||||||||||||||||||    
T  28660883 attcaataatattttagagagttttctaaattttctggtggatttcggaaccctattttcacaagt 28660818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 538
Target Start/End: Complemental strand, 11200018 - 11199966
Alignment:
Q  486 aaaaccttaaaacattagatatatgaatcacctctattatatatccaacattt 538  Q
    ||||||||||  ||||||  |||||| |||||||| |||||||||||||||||    
T  11200018 aaaaccttaaggcattaggcatatgagtcacctctcttatatatccaacattt 11199966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 31915511 - 31915567
Alignment:
Q  346 tattttagagagtttt-cacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||| | ||||||||| |||| ||  |||||||||||||||||||    
T  31915511 tattttagagagtttttctcaatttctggtggattccggaaccctattttcacaagt 31915567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 538
Target Start/End: Original strand, 50391954 - 50392006
Alignment:
Q  486 aaaaccttaaaacattagatatatgaatcacctctattatatatccaacattt 538  Q
    |||||||||| ||||||| ||||||| |||| | | |||||||||||||||||    
T  50391954 aaaaccttaagacattaggtatatgagtcacatatcttatatatccaacattt 50392006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 9652 - 9722
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagtgtt 404  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||| |   ||||||||||||||||||||||    
T  9652 ttcattcaataatatttcagagagttttctcaatttctggtggatttcggaaccctattttcacaagtgtt 9722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 18252366 - 18252430
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcaca 398  Q
    ||||||||||||||||||| ||||||||| ||||||||  |||| | ||||||||||||||||||    
T  18252366 ttcattcaataatattttaaagagttttctcaatttctagtggattatagaaccctattttcaca 18252430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 26140298 - 26140360
Alignment:
Q  339 tcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||||||| |||||| || |||| ||| |||||||||||||| ||||    
T  26140298 tcaataatattttagagagttttctcaatttttggtggattcttgaaccctattttcataagt 26140360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 514
Target Start/End: Complemental strand, 8215152 - 8215124
Alignment:
Q  486 aaaaccttaaaacattagatatatgaatc 514  Q
    |||||||||||||||||||||||||||||    
T  8215152 aaaaccttaaaacattagatatatgaatc 8215124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 1320188 - 1320124
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttcaca 398  Q
    ||||||||||||||||||||||| ||||| | ||||||| |||| ||| ||||||||||||||||    
T  1320188 ttcattcaataatattttagagaattttctctatttctggtggattctggaaccctattttcaca 1320124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 2472828 - 2472760
Alignment:
Q  334 ttcattcaataatattttagagagtttt-cacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||| ||||||||||||||| ||||||| | ||||||||| |||| ||  |||||||||||||||||||    
T  2472828 ttcaatcaataatattttagtgagtttttctcaatttctggtggattccggaaccctattttcacaagt 2472760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 538
Target Start/End: Complemental strand, 37626700 - 37626644
Alignment:
Q  482 acctaaaaccttaaaacattagatatatgaatcacctctattatatatccaacattt 538  Q
    |||||||| ||||| ||||||| |||||| || |||||| |||||||||||||||||    
T  37626700 acctaaaatcttaagacattaggtatatgtatgacctctcttatatatccaacattt 37626644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 552
Target Start/End: Complemental strand, 43481687 - 43481617
Alignment:
Q  482 acctaaaaccttaaaacattagatatatgaatcacctctattatatatccaacatttcctccaatcctagt 552  Q
    |||||||| |||||  ||| || ||||||  || ||||| ||||||||||||||||||||||| |||||||    
T  43481687 acctaaaatcttaatgcatcaggtatatgggtcccctctcttatatatccaacatttcctccattcctagt 43481617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 52708801 - 52708842
Alignment:
Q  331 tttttcattcaataatattttagagagttttcacaatttctg 372  Q
    ||||| |||||||||||||||||||||||||| |||| ||||    
T  52708801 ttttttattcaataatattttagagagttttctcaatatctg 52708842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 558 - 590
Target Start/End: Complemental strand, 21829224 - 21829192
Alignment:
Q  558 tcaatggtttgtggaacattttgtattattttc 590  Q
    ||||||||||| |||||||||||||||||||||    
T  21829224 tcaatggtttgaggaacattttgtattattttc 21829192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 33528376 - 33528312
Alignment:
Q  292 cctagcatttaagcttaacatttgtaacctaacagacagtttttcattcaataatattttagaga 356  Q
    ||||| ||||||||| || |||||||  |||| ||||| ||||||||||||||| ||| ||||||    
T  33528376 cctagtatttaagctaaagatttgtaggctaagagacactttttcattcaataaaattatagaga 33528312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 394
Target Start/End: Complemental strand, 34373962 - 34373865
Alignment:
Q  300 ttaagcttaacatttgtaacctaacagacagttttt---cattcaataatattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    |||||||||||| ||||| ||||| || ||| ||||   ||||||||||||||||||||||||||| ||||||||| |||| || | |||| ||||||    
T  34373962 ttaagcttaacagttgtagcctaagaggcagcttttgatcattcaataatattttagagagttttctcaatttctggtggattccataaccatatttt 34373865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 12882072 - 12882140
Alignment:
Q  334 ttcattcaataatattttagagag-ttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||| ||   ||||||||||||||||||    
T  12882072 ttcattcaataatattttagagagtttttctcaatttctggtggattccgaaaccctattttcacaagt 12882140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 538
Target Start/End: Complemental strand, 15092160 - 15092102
Alignment:
Q  480 ttacctaaaaccttaaaacattagatatatgaatcacctctattatatatccaacattt 538  Q
    ||||||||||||||||| ||| || |||||| ||| |||||  ||||||||||||||||    
T  15092160 ttacctaaaaccttaaagcatcaggtatatggatcccctctcgtatatatccaacattt 15092102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 11658881 - 11658949
Alignment:
Q  334 ttcattcaataatattttagagag-ttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||| ||||||||||||||||||| ||||| |||||| || |||| || | ||| ||||||||||||||    
T  11658881 ttcaatcaataatattttagagagtttttctcaatttttggtggattccaaaactctattttcacaagt 11658949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 558 - 590
Target Start/End: Complemental strand, 17860540 - 17860508
Alignment:
Q  558 tcaatggtttgtggaacattttgtattattttc 590  Q
    ||||||||||| |||||||||||||||||||||    
T  17860540 tcaatggtttgaggaacattttgtattattttc 17860508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 394
Target Start/End: Complemental strand, 24443210 - 24443150
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctatttt 394  Q
    ||||||||||||||||  |||||||||||  |||||||| | || ||| ||||||||||||    
T  24443210 ttcattcaataatattgcagagagttttcttaatttctggttgattctggaaccctatttt 24443150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 27822258 - 27822190
Alignment:
Q  334 ttcattcaataatattttagagag-ttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||| |   ||||||| |||||||||||    
T  27822258 ttcaatcaataatattttagagagtttttctcaatttctggtggatttcggaaccctgttttcacaagt 27822190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 33615636 - 33615576
Alignment:
Q  341 aataatattttagagagttttcacaatttctgctggactctagaaccctattttcacaagt 401  Q
    |||||||||||||||||||||  |||||| || || | |||  ||||||||||||||||||    
T  33615636 aataatattttagagagttttttcaatttatggtgaattctgaaaccctattttcacaagt 33615576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 400
Target Start/End: Original strand, 145683 - 145750
Alignment:
Q  334 ttcattcaataatattttagagagtttt-cacaatttctgctggactctagaaccctattttcacaag 400  Q
    ||||||||||||||||||||| | |||| | |||||| || |||| |||||||||||||||| |||||    
T  145683 ttcattcaataatattttagataatttttctcaatttttggtggattctagaaccctatttttacaag 145750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 15997 - 16059
Alignment:
Q  334 ttcattcaataatattttagagagttttcacaatttctgctggactctagaaccctattttca 396  Q
    ||||||||||||||||||| |||||||||  |||||||| |||| |||| ||  |||||||||    
T  15997 ttcattcaataatattttatagagttttctaaatttctggtggattctataatactattttca 16059  T

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