View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11381_low_9 (Length: 551)

Name: NF11381_low_9
Description: NF11381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11381_low_9
NF11381_low_9
[»] chr1 (4 HSPs)
chr1 (21-114)||(49713207-49713300)
chr1 (21-114)||(49655685-49655778)
chr1 (196-320)||(18655503-18655627)
chr1 (199-261)||(9850028-9850090)
[»] chr6 (9 HSPs)
chr6 (196-345)||(13562201-13562356)
chr6 (196-345)||(13561334-13561489)
chr6 (197-324)||(10673666-10673793)
chr6 (395-474)||(9928083-9928172)
chr6 (198-308)||(25439055-25439165)
chr6 (196-270)||(24318050-24318124)
chr6 (405-440)||(27439180-27439215)
chr6 (196-261)||(27108170-27108234)
chr6 (196-261)||(27149967-27150031)
[»] chr5 (12 HSPs)
chr5 (196-324)||(38603682-38603810)
chr5 (196-324)||(42962079-42962207)
chr5 (196-266)||(39050744-39050814)
chr5 (196-261)||(8358224-8358289)
chr5 (196-308)||(42963163-42963275)
chr5 (196-345)||(39051578-39051732)
chr5 (196-266)||(5163716-5163786)
chr5 (196-344)||(38602718-38602873)
chr5 (399-440)||(38473221-38473262)
chr5 (196-261)||(8359409-8359474)
chr5 (196-279)||(301416-301499)
chr5 (218-292)||(4904280-4904355)
[»] chr4 (10 HSPs)
chr4 (196-324)||(31204610-31204738)
chr4 (196-323)||(21569306-21569433)
chr4 (196-324)||(21570355-21570483)
chr4 (196-324)||(31205641-31205769)
chr4 (196-261)||(54823253-54823318)
chr4 (204-270)||(44219014-44219080)
chr4 (199-261)||(54822437-54822499)
chr4 (196-257)||(44217629-44217690)
chr4 (196-292)||(47573608-47573704)
chr4 (196-267)||(42698650-42698721)
[»] chr2 (7 HSPs)
chr2 (196-345)||(38593087-38593241)
chr2 (196-345)||(38596683-38596837)
chr2 (196-323)||(10330762-10330888)
chr2 (196-323)||(371900-372027)
chr2 (196-345)||(38593956-38594107)
chr2 (196-345)||(38597552-38597703)
chr2 (204-324)||(370831-370951)
[»] chr3 (10 HSPs)
chr3 (196-324)||(50002469-50002597)
chr3 (196-324)||(50003155-50003283)
chr3 (196-324)||(21248189-21248317)
chr3 (197-324)||(27225490-27225617)
chr3 (202-323)||(5409400-5409521)
chr3 (197-317)||(27226478-27226598)
chr3 (196-261)||(55387641-55387706)
chr3 (218-324)||(45730714-45730820)
chr3 (198-323)||(5384479-5384604)
chr3 (196-266)||(21247292-21247362)
[»] chr7 (13 HSPs)
chr7 (196-323)||(23153563-23153690)
chr7 (196-324)||(35044675-35044804)
chr7 (196-324)||(36584837-36584965)
chr7 (204-324)||(47536782-47536902)
chr7 (196-323)||(47535715-47535842)
chr7 (196-310)||(43704398-43704512)
chr7 (196-312)||(35045838-35045954)
chr7 (196-324)||(40321125-40321253)
chr7 (208-324)||(42520289-42520405)
chr7 (196-324)||(42521190-42521318)
chr7 (197-266)||(40322225-40322295)
chr7 (196-324)||(43703109-43703237)
chr7 (218-294)||(40881168-40881245)
[»] chr8 (8 HSPs)
chr8 (196-324)||(41767096-41767224)
chr8 (196-320)||(44770550-44770674)
chr8 (196-267)||(43415957-43416028)
chr8 (210-324)||(44769749-44769862)
chr8 (196-324)||(12820031-12820158)
chr8 (196-257)||(43414437-43414498)
chr8 (196-271)||(23768471-23768545)
chr8 (196-292)||(9189450-9189546)
[»] scaffold0013 (2 HSPs)
scaffold0013 (195-324)||(32157-32285)
scaffold0013 (195-324)||(27886-28016)
[»] scaffold0041 (1 HSPs)
scaffold0041 (218-294)||(85038-85115)
[»] scaffold0003 (1 HSPs)
scaffold0003 (405-440)||(48147-48182)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 49713207 - 49713300
Alignment:
Q  21 cactggagggaggtgtggctttgataaagatgtatacagtttcaggtgttactgcactgatagagttcatcctgcaaagtgtgatacaggtttg 114  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  49713207 cactggaggaaggtgtggctttgataaagatgtatacagtttcaggtgttactgcactgatagagttcattctgcaaaatgtgatacaggtttg 49713300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 49655685 - 49655778
Alignment:
Q  21 cactggagggaggtgtggctttgataaagatgtatacagtttcaggtgttactgcactgatagagttcatcctgcaaagtgtgatacaggtttg 114  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  49655685 cactggaggaaggtgtggctttgataaagatgtatacaatttcaagtgttactgcactgatagagttcattctgcaaaatgtgatacaggtttg 49655778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 320
Target Start/End: Original strand, 18655503 - 18655627
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| |||||| |  ||||||||| ||||||| |||||||||||| | |||||||||||| |||   ||   |||||| |||||||||| ||||    
T  18655503 ttaaacgtttcaaaatgtttatttatctttgttttaatgatcaatttagtccttttttattaattttaaaatccttaaaaagaagaccgttggat-aaag 18655601  T
Q  295 gaggtccatcagatctaaaagtgtat 320  Q
    ||||||||| |||||||| |||||||    
T  18655602 gaggtccattagatctaatagtgtat 18655627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 9850028 - 9850090
Alignment:
Q  199 aacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 261  Q
    ||||||| ||||||||||||||| ||| ||||| ||||||||||  || ||||||||||||||    
T  9850028 aacgtttcaaaatggtcctttatatttgttttagtcatcaatttgatcctattttattaattt 9850090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 196 - 345
Target Start/End: Complemental strand, 13562356 - 13562201
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||||||||||||| ||||| |||| ||||| ||| |||||||||||||| ||||  |||  |||||| || ||||||| ||||    
T  13562356 ttaaacgtttcaaaatggtcctttatctttattttagtcataaatttggtcctattttattaattttaaactcctaaaaaagaagactgttggat-aaag 13562258  T
Q  295 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 345  Q
    ||| |||||||||||||| |||||||      |||||||||||||||||||||||||    
T  13562257 gagatccatcagatctaacagtgtatcaccaacacctaatttatatcactttcttca 13562201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 196 - 345
Target Start/End: Original strand, 13561334 - 13561489
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||| ||||||||| || || |||||||||| ||| |||||||||||||| ||||  ||   |||||| | |||||||| ||||    
T  13561334 ttaaacgtttcaaaatggtcttttatctttgttatagtcatcaatttggtcctattttattaattttaaactcctcaaaaagaagatcgttggat-aaag 13561432  T
Q  295 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 345  Q
     ||||||||||||||||| |||||||      |||||||||||||||||||||||||    
T  13561433 aaggtccatcagatctaatagtgtatcaccaacacctaatttatatcactttcttca 13561489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 197 - 324
Target Start/End: Original strand, 10673666 - 10673793
Alignment:
Q  197 taaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagg 295  Q
    ||||||||| ||  ||||||||||| ||| ||||  |||||||||||||| |||||||||||||| |||||| |   |||||| ||||||| || |||||    
T  10673666 taaacgtttcaatttggtcctttatgtttgttttcgtcatcaatttagtcctattttattaattttaaacctttcaaaaagaagaccgttgaat-aaagg 10673764  T
Q  296 aggtccatcagatctaaaagtgtatcacc 324  Q
    |||||||||| ||||||| ||||||||||    
T  10673765 aggtccatcatatctaaaggtgtatcacc 10673793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 474
Target Start/End: Complemental strand, 9928172 - 9928083
Alignment:
Q  395 tctcatcactacacctccaatttcttaaatccagaaatcatcaaca----------tcaacatgatgatgatgatcatcaatttcttcat 474  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||          |||||||||||||||| |||||||||||||||||    
T  9928172 tctcgtcactacacctccaatttctaaaattcagaaatcatcaacaacaatcaacatcaacatgatgatgatcatcatcaatttcttcat 9928083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 308
Target Start/End: Complemental strand, 25439165 - 25439055
Alignment:
Q  198 aaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagga 296  Q
    |||||||| ||  ||||| ||||||||| |||| || |||||||| |||  ||||||||||||| ||||||||   |||||| |||||||||| ||||||    
T  25439165 aaacgtttcaatttggtcttttatctttgttttcattatcaatttggtccaattttattaattttaaacctcttaaaaagaagaccgttggat-aaagga 25439067  T
Q  297 ggtccatcagat 308  Q
    ||| ||||||||    
T  25439066 ggttcatcagat 25439055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 24318124 - 24318050
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctct 270  Q
    |||||| ||||||  ||||||||||||||| ||||  ||||||||||  ||  ||||||||||||||||||||||    
T  24318124 ttaaactttttaatttggtcctttatctttgttttcgtcatcaatttgatcccattttattaatttcaaacctct 24318050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Original strand, 27439180 - 27439215
Alignment:
Q  405 acacctccaatttcttaaatccagaaatcatcaaca 440  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27439180 acacctccaatttcttaaatccagaaatcgtcaaca 27439215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 27108234 - 27108170
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 261  Q
    |||||||||||||  ||| |||| |||||| |||| |||||| |||||||| ||||||||||||||    
T  27108234 ttaaacgttttaatttggacctt-atctttgttttcatcatcgatttagtcctattttattaattt 27108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 27150031 - 27149967
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 261  Q
    |||||||||||||  ||| |||| |||||| |||| |||||| |||||||| ||||||||||||||    
T  27150031 ttaaacgttttaatttggacctt-atctttgttttcatcatcgatttagtcctattttattaattt 27149967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 38603810 - 38603682
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||| ||| ||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||| ||||  |||  |||||| |||||||||| ||||    
T  38603810 ttaaacttttcaaaatggtcctttatctttgttttagtcatcaatttggtcctattttattaattttaaactcctaaaaaagaagaccgttggat-aaag 38603712  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
     ||||||||||||||||| |||||||||||    
T  38603711 aaggtccatcagatctaatagtgtatcacc 38603682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 42962079 - 42962207
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    ||||||| |||||| ||||||||||||||| |||| ||||||||||| ||| |||||||||||||| ||||||||   |||||| |||||||||| ||||    
T  42962079 ttaaacgctttaaattggtcctttatctttgttttcatcatcaatttggtcctattttattaattttaaacctctcaaaaagaagaccgttggat-aaag 42962177  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    |||||| || ||||||||  ||||||||||    
T  42962178 gaggtctataagatctaatggtgtatcacc 42962207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 39050744 - 39050814
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 266  Q
    |||||||||| ||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||| ||||    
T  39050744 ttaaacgtttcaaaatggtcctttatctttattttagtcataaatttggtcatattttattaattttaaac 39050814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 8358224 - 8358289
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 261  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| ||| ||||||||||||||||||    
T  8358224 ttaaacgttttaaaatggtcttttatctttgttttagtcatcattttggtcatattttattaattt 8358289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 42963275 - 42963163
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaaga-aaccgttggataaaag 294  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||| || |||||||||||||| ||||||||   |||||  |||||||||| ||||    
T  42963275 ttaaacgtttcaatttggtcatttatctttgttttcatcatcaatttaatcctattttattaattttaaacctctcaaaaagatgaccgttggat-aaag 42963177  T
Q  295 gaggtccatcagat 308  Q
    ||||||||||||||    
T  42963176 gaggtccatcagat 42963163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 345
Target Start/End: Complemental strand, 39051732 - 39051578
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaaaccgttggataaaagg 295  Q
    ||||| |||| ||||||||||||||||||| ||||| ||||||||||  || |||||||||||||| ||||  ||   ||| | |||| | ||| ||||     
T  39051732 ttaaatgtttcaaaatggtcctttatctttgttttagtcatcaatttgatcctattttattaattttaaactcctcaaaaaaagaccgctagat-aaaga 39051634  T
Q  296 aggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 345  Q
    ||||||||||||||||| |||||||      |||||||||||||||| ||||||||    
T  39051633 aggtccatcagatctaatagtgtatcatcaacacctaatttatatcattttcttca 39051578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 5163716 - 5163786
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 266  Q
    ||||| |||| |||||| |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||    
T  5163716 ttaaatgtttcaaaatgatcctttatctttgttttaattatcaatttggtcatattttattaattttaaac 5163786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 344
Target Start/End: Original strand, 38602718 - 38602873
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatc-tttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaa 293  Q
    |||||||||||||||||||||| |||| ||| ||||| |||| ||||| |||||||||||||||||| ||||  ||   |||||| || |||||||||||    
T  38602718 ttaaacgttttaaaatggtcctctatcttttattttagtcataaatttggtcatattttattaattttaaactcctcaaaaagaagacagttggataaaa 38602817  T
Q  294 ggaggtccatcagatctaaaagtgtatcacc------taatttatatcactttcttc 344  Q
     ||  | |||||||||||| | |||||||||      ||||||||||||||||||||    
T  38602818 -gatattcatcagatctaacaatgtatcaccaacacttaatttatatcactttcttc 38602873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 38473262 - 38473221
Alignment:
Q  399 atcactacacctccaatttcttaaatccagaaatcatcaaca 440  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  38473262 atcactacacctccaattttttaaatccagaaatcatcaaca 38473221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 8359474 - 8359409
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 261  Q
    ||||| |||||||||||||| ||||||||| ||||| |||||| ||| ||| |||||||| |||||    
T  8359474 ttaaaagttttaaaatggtcttttatctttgttttagtcatcattttggtcctattttataaattt 8359409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 301416 - 301499
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa 279  Q
    ||||||||| ||||||| || ||| ||||| |||||  |||||||||  || |||||||||||||| ||||||||  |||||||    
T  301416 ttaaacgttataaaatgatcttttctctttgttttagccatcaatttgatcctattttattaattttaaacctcttagaaagaa 301499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 292
Target Start/End: Original strand, 4904280 - 4904355
Alignment:
Q  218 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaa 292  Q
    |||||||| |||| |||||| |||| |||||||||||||||||| |||  ||||  |||||| |||||||||||||    
T  4904280 ttatctttgttttcatcatcgatttggtcatattttattaattttaaatttctaaaaaagaagaccgttggataaa 4904355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 31204610 - 31204738
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||| ||||  ||   |||||| |||||||||| ||||    
T  31204610 ttaaacgtttcaaaatggtcatttatctttattttaatcatcaatttggtcctattttattaattttaaactccttaaaaagaagaccgttggat-aaag 31204708  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    || ||||||||||||||| |||||||||||    
T  31204709 gatgtccatcagatctaacagtgtatcacc 31204738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 21569306 - 21569433
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||| ||||| ||||||||||||||||| ||||||||   |||||| |||||||||| ||||    
T  21569306 ttaaacgtttcaatttggtcatttatctttgttttcatcatctatttaatcatattttattaattttaaacctctcaaaaagaagaccgttggat-aaag 21569404  T
Q  295 gaggtccatcagatctaaaagtgtatcac 323  Q
    |||||||||||||||||| ||||||||||    
T  21569405 gaggtccatcagatctaacagtgtatcac 21569433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 21570483 - 21570355
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||  || |||||||||||||| ||||||||   |||||| |||||||||| ||||    
T  21570483 ttaaacgtttcaatttggtcatttatctttgttttcatcatcaatttgatcctattttattaattttaaacctctcaaaaagaagaccgttggat-aaag 21570385  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    |||||| |||||||||||  ||||||||||    
T  21570384 gaggtctatcagatctaatcgtgtatcacc 21570355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 31205769 - 31205641
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||||||||||||| ||||||| || ||||| |||||||||||||||||| ||||  ||   |||||| ||  |||||| ||||    
T  31205769 ttaaacgtttcaaaatggtcctttatctttgttttaattattaatttggtcatattttattaattttaaactccttaaaaagaagacatttggat-aaag 31205671  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    ||| ||||||||||||||  ||||||||||    
T  31205670 gagatccatcagatctaacggtgtatcacc 31205641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 54823318 - 54823253
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 261  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||    
T  54823318 ttaaacgttttaaaatggtcctttatctttgttttagtcatcaatttgatcatattttattaattt 54823253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 204 - 270
Target Start/End: Complemental strand, 44219080 - 44219014
Alignment:
Q  204 tttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctct 270  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||| ||||||||| |||| ||||||||    
T  44219080 tttaaattggtcctttatctttgtttttatcatcaatttggtcctattttattgattttaaacctct 44219014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 54822437 - 54822499
Alignment:
Q  199 aacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 261  Q
    ||||||| ||||||||||||||| ||| ||||| ||||||||||  || ||||||||||||||    
T  54822437 aacgtttcaaaatggtcctttatatttgttttagtcatcaatttgatcctattttattaattt 54822499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 44217629 - 44217690
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttatta 257  Q
    |||||||||||||  ||||| ||||||||| |||| ||||||||||| ||| ||||||||||    
T  44217629 ttaaacgttttaatttggtcttttatctttgttttcatcatcaatttggtcctattttatta 44217690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 47573704 - 47573608
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaa 292  Q
    |||||||||||||  |||||||| |||||| ||||  ||||| |||| |||||||||||||||||| ||| ||||   |||||| |||||||||||||    
T  47573704 ttaaacgttttaatttggtcctt-atctttgtttttgtcatcgatttggtcatattttattaattttaaatctctgaaaaagaagaccgttggataaa 47573608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 42698721 - 42698650
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacc 267  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||||||  |||||||| |||| |||||    
T  42698721 ttaaacgtttcaatttggtcatttatctttgttttcatcatcaatttagtcccattttatttattttaaacc 42698650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 196 - 345
Target Start/End: Original strand, 38593087 - 38593241
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||| ||| |||||||||||||| ||||  ||   |||||| |||||||||||||      
T  38593087 ttaaacgtttcaaaatggtcctttgtctttgttttagtcatcaatttggtcctattttattaattttaaactcctcaaaaagaagaccgttggataaa-- 38593184  T
Q  295 gaggtccatcagatctaaaagtgtatcacc------taatttatatcactttcttca 345  Q
    ||| |||||||||||||| |||||||||||      |||||||||||||||||||||    
T  38593185 gagatccatcagatctaatagtgtatcaccaacacttaatttatatcactttcttca 38593241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 196 - 345
Target Start/End: Original strand, 38596683 - 38596837
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||| ||| |||||||||||||| ||||  ||   |||||| |||||||||||||      
T  38596683 ttaaacgtttcaaaatggtcctttgtctttgttttagtcatcaatttggtcctattttattaattttaaactcctcaaaaagaagaccgttggataaa-- 38596780  T
Q  295 gaggtccatcagatctaaaagtgtatcacc------taatttatatcactttcttca 345  Q
    ||| |||||||||||||| |||||||||||      |||||||||||||||||||||    
T  38596781 gagatccatcagatctaatagtgtatcaccaacacttaatttatatcactttcttca 38596837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 10330762 - 10330888
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||| ||||||||| |||||  ||| ||||| ||| |||||||||||||| ||||| ||   |||||| ||  |||||||||      
T  10330762 ttaaacgtttcaaaatggtcatttatctttgttttagccattaatttggtcctattttattaattttaaaccccttaaaaagaagactattggataaa-- 10330859  T
Q  295 gaggtccatcagatctaaaagtgtatcac 323  Q
    |||||| ||||||||||| ||||||||||    
T  10330860 gaggtctatcagatctaacagtgtatcac 10330888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 323
Target Start/End: Complemental strand, 372027 - 371900
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaaga-aaccgttggataaaag 294  Q
    |||||||||| ||  || |||||||||||| |||| |||||||||||  || |||||||||||||| ||||||||   |||||  || ||||||| ||||    
T  372027 ttaaacgtttcaatttgatcctttatctttgttttcatcatcaatttgatcctattttattaattttaaacctctcaaaaagatgactgttggat-aaag 371929  T
Q  295 gaggtccatcagatctaaaagtgtatcac 323  Q
    ||||| ||||||||||||  |||||||||    
T  371928 gaggttcatcagatctaacggtgtatcac 371900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 345
Target Start/End: Complemental strand, 38594107 - 38593956
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||||||||||||| ||||||||| |||||  ||| ||||| ||| |||||||||||||| |||| | |   |||||| |  ||||||| ||||    
T  38594107 ttaaacgttttaaaatggtcatttatctttattttagacataaatttggtcctattttattaattttaaacttatcaaaaagaagattgttggat-aaag 38594009  T
Q  295 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 345  Q
    ||||||||||||||||    ||||||      |||||||||||||||||||||||||    
T  38594008 gaggtccatcagatct----gtgtatcaccaacacctaatttatatcactttcttca 38593956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 345
Target Start/End: Complemental strand, 38597703 - 38597552
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||||||||||||| ||||||||| |||||  ||| ||||| ||| |||||||||||||| |||| | |   |||||| |  ||||||| ||||    
T  38597703 ttaaacgttttaaaatggtcatttatctttattttagacataaatttggtcctattttattaattttaaacttatcaaaaagaagattgttggat-aaag 38597605  T
Q  295 gaggtccatcagatctaaaagtgtat------cacctaatttatatcactttcttca 345  Q
    ||||||||||||||||    ||||||      |||||||||||||||||||||||||    
T  38597604 gaggtccatcagatct----gtgtatcaccaacacctaatttatatcactttcttca 38597552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 370831 - 370951
Alignment:
Q  204 tttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtcca 302  Q
    |||||| ||||| ||||||||| |||| |||||||||||  || ||||||||| |||| |||||||||  ||| || |||||||||| ||| |||||| |    
T  370831 tttaaattggtcatttatctttgtttttatcatcaatttgatcctattttattgattttaaacctctaaaaaataagaccgttggat-aaatgaggtcta 370929  T
Q  303 tcagatctaaaagtgtatcacc 324  Q
    ||| ||||||  ||||||||||    
T  370930 tcaaatctaatggtgtatcacc 370951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 50002469 - 50002597
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    ||||||||||  |||||||||||||| ||| |||||||||||||||||||| |||||||||||||| ||||  || | |||||| | |||||||| ||||    
T  50002469 ttaaacgtttcgaaatggtcctttatgtttgttttaatcatcaatttagtcctattttattaattttaaactccttcaaaagaagatcgttggat-aaag 50002567  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    ||| ||||||||||||||  ||||||||||    
T  50002568 gagatccatcagatctaacggtgtatcacc 50002597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 50003283 - 50003155
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||| ||||  ||   ||| || |||||||||| ||||    
T  50003283 ttaaacgtttcaaaatggtcctttatgtttgttttaatcatcaatttggtcctattttattaattttaaactccttaaaaataagaccgttggat-aaag 50003185  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    |||||| |||||||||||  ||||||||||    
T  50003184 gaggtcaatcagatctaacggtgtatcacc 50003155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 21248317 - 21248189
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| |||||||||| |||||||| ||||| |||| | ||| ||| |||||||||||||| ||||||||   |||||| || |||||||  |||    
T  21248317 ttaaacgtttcaaaatggtcccttatctttgttttagtcattattttggtcctattttattaattttaaacctcttaaaaagaagactgttggat-taag 21248219  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    |||||||||| |||||||  ||||||||||    
T  21248218 gaggtccatcggatctaacggtgtatcacc 21248189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 324
Target Start/End: Original strand, 27225490 - 27225617
Alignment:
Q  197 taaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagg 295  Q
    ||||||||| ||  |||| |||||| ||| ||||  |||||||||||||| |||||||||||||| |||||| |   |||||| |||||||||| ||||     
T  27225490 taaacgtttcaatttggttctttatgtttgttttcgtcatcaatttagtcctattttattaattttaaacctttcaaaaagaagaccgttggat-aaaga 27225588  T
Q  296 aggtccatcagatctaaaagtgtatcacc 324  Q
    | |||||||||||||||| ||||||||||    
T  27225589 aagtccatcagatctaaaggtgtatcacc 27225617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 202 - 323
Target Start/End: Original strand, 5409400 - 5409521
Alignment:
Q  202 gttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtc 300  Q
    |||||||  ||||||||||||||| |||| |||||||||||  ||  ||||||||||||| ||||||||   |||||| |||||||||| |||||||||     
T  5409400 gttttaatttggtcctttatctttgttttcatcatcaatttgatccaattttattaattttaaacctcttaaaaagaagaccgttggat-aaaggaggtt 5409498  T
Q  301 catcagatctaaaagtgtatcac 323  Q
    |||||||| |||  |||||||||    
T  5409499 catcagatttaacggtgtatcac 5409521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 27226598 - 27226478
Alignment:
Q  197 taaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagg 295  Q
    ||||||||| ||  ||||||||||| ||| |||| ||||||||||| ||| |||||||||||||| ||||| ||   |||||| | |||||||| |||||    
T  27226598 taaacgtttcaatttggtcctttatgtttgttttcatcatcaatttggtcctattttattaattttaaacccctcaaaaagaagatcgttggat-aaagg 27226500  T
Q  296 aggtccatcagatctaaaagtg 317  Q
    |||||||| |||||||| ||||    
T  27226499 aggtccataagatctaacagtg 27226478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 55387706 - 55387641
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaattt 261  Q
    ||||||||||||| ||| || ||||||||| |||||||||||||||| ||||||||||||| ||||    
T  55387706 ttaaacgttttaagatgatcttttatctttgttttaatcatcaatttggtcatattttattgattt 55387641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 324
Target Start/End: Original strand, 45730714 - 45730820
Alignment:
Q  218 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtccatcagatctaaaagt 316  Q
    |||||||| |||| |||||| |||||||| |||||||||||||| ||| |  ||  |||||| |||||||||| |||||| || ||||| ||||||  ||    
T  45730714 ttatctttgttttcatcatcgatttagtcctattttattaatttgaaatccataaaaaagaagaccgttggat-aaaggaagttcatcatatctaaccgt 45730812  T
Q  317 gtatcacc 324  Q
    ||||||||    
T  45730813 gtatcacc 45730820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 323
Target Start/End: Original strand, 5384479 - 5384604
Alignment:
Q  198 aaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaagga 296  Q
    |||||||| ||  ||||||| ||||||| |||| | ||||||||| |||  ||||||||||||| ||||||||   |||||| ||||| |||| ||| ||    
T  5384479 aaacgtttcaatttggtcctctatctttgttttcaacatcaatttggtccaattttattaattttaaacctcttaaaaagaagaccgtgggat-aaatga 5384577  T
Q  297 ggtccatcagatctaaaagtgtatcac 323  Q
    ||| |||||||| |||  |||||||||    
T  5384578 ggttcatcagatttaacggtgtatcac 5384604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 21247292 - 21247362
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 266  Q
    |||||||||| |||||||||| |||||||| ||||| |||| | ||| ||  |||||||||||||| ||||    
T  21247292 ttaaacgtttcaaaatggtcccttatctttgttttagtcataattttggttctattttattaattttaaac 21247362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 196 - 323
Target Start/End: Complemental strand, 23153690 - 23153563
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||  ||||| ||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||   |||||| || ||||||| ||||    
T  23153690 ttaaacgtttcaatttggtcatttatctttgtttttatcatcaatttaatcatattttattaattttaaacctctcaaaaagaagactgttggat-aaag 23153592  T
Q  295 gaggtccatcagatctaaaagtgtatcac 323  Q
    ||||||||||||||||||  |||||||||    
T  23153591 gaggtccatcagatctaacggtgtatcac 23153563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 35044675 - 35044804
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtca-tattttattaatttcaaacctctacgaaagaa-accgttggataaaa 293  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||| |||| | |||||||||||| |||   ||   |||||| |||||||||| |||    
T  35044675 ttaaacgtttcaaaatgatcctttatctttgttttaatcatcaatttggtcatttttttattaattttaaaatccttaaaaagaagaccgttggat-aaa 35044773  T
Q  294 ggaggtccatcagatctaaaagtgtatcacc 324  Q
    |||||||||| |||||||| |||||||||||    
T  35044774 ggaggtccattagatctaagagtgtatcacc 35044804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 36584965 - 36584837
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||| ||| ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||| | ||   || ||| |||||||||| ||||    
T  36584965 ttaaacatttcaaaatggtcctttatctttattttagtcatcaatttggtcatattttattaattttaaagcccttaaaacgaagaccgttggat-aaag 36584867  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    ||||||||| | |||||| |||| ||||||    
T  36584866 gaggtccattatatctaagagtggatcacc 36584837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 324
Target Start/End: Complemental strand, 47536902 - 47536782
Alignment:
Q  204 tttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtcca 302  Q
    |||||| ||||||||||||||| |||| ||||||||||| ||| ||||||||| |||| |||| |||   |||||| |||||||||||||| |||||| |    
T  47536902 tttaaattggtcctttatctttgtttttatcatcaatttggtcctattttattgattttaaacttctcaaaaagaagaccgttggataaaa-gaggtcta 47536804  T
Q  303 tcagatctaaaagtgtatcacc 324  Q
    ||||||||||  ||||||||||    
T  47536803 tcagatctaatggtgtatcacc 47536782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 47535715 - 47535842
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaaga-aaccgttggataaaag 294  Q
    |||||||||| ||  ||||||||||||||| |||| ||||||||||| ||| |||||||||||||| ||||||||   |||||  || ||||||| ||||    
T  47535715 ttaaacgtttcaatttggtcctttatctttgtttttatcatcaatttggtcctattttattaattttaaacctctcaaaaagatgactgttggat-aaag 47535813  T
Q  295 gaggtccatcagatctaaaagtgtatcac 323  Q
    ||| ||||||||||||||  |||||||||    
T  47535814 gagatccatcagatctaacggtgtatcac 47535842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 196 - 310
Target Start/End: Complemental strand, 43704512 - 43704398
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||||||||||||| ||||| |||||| |||| || |||||||||||||| ||||| ||   |||||| |||||||||| ||||    
T  43704512 ttaaacgtttcaaaatggtcctttatctttgttttagtcatcattttaatcctattttattaattttaaaccccttaaaaagaagaccgttggat-aaag 43704414  T
Q  295 gaggtccatcagatct 310  Q
    ||| |||||| |||||    
T  43704413 gagatccatcggatct 43704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 35045954 - 35045838
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||  || |||||||||||||| ||||  ||   |||||| |||||||||| ||||    
T  35045954 ttaaacgtttcaaaatggtcatttatctttgttttaatcatcaatttgatcctattttattaattttaaactccttaaaaagaataccgttggat-aaag 35045856  T
Q  295 gaggtccatcagatctaa 312  Q
    ||| |||||| |||||||    
T  35045855 gagatccatcggatctaa 35045838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 40321125 - 40321253
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||| | | | |||||||||||| |||    |   |||||| |||||||||| ||||    
T  40321125 ttaaacgtttcaaaatgatcctttatctttgttttaatcatcaatttgggccttttttattaattttaaaatcattaaaaagaagaccgttggat-aaag 40321223  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    ||||||||| |||||||| |||||||||||    
T  40321224 gaggtccattagatctaacagtgtatcacc 40321253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 324
Target Start/End: Original strand, 42520289 - 42520405
Alignment:
Q  208 aaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaag-aaaccgttggataaaaggaggtccatcag 306  Q
    |||||||||| ||||||| ||||| |||||||||| |||||||||||| ||||| |||||  |   |||| | |||||||||| |||||||||| |||||    
T  42520289 aaatggtcctgtatctttgttttagtcatcaattttgtcatattttatcaattttaaacccattaaaaagtagaccgttggat-aaaggaggtctatcag 42520387  T
Q  307 atctaaaagtgtatcacc 324  Q
    ||||||  ||||||||||    
T  42520388 atctaacggtgtatcacc 42520405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 42521318 - 42521190
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| ||||||||||| || |||| ||||| |||||||||| ||| |||||||| ||||| |||   ||   ||| || |||||||||| ||||    
T  42521318 ttaaacgtttcaaaatggtcctctacctttgttttagtcatcaatttggtcctattttatcaattttaaaatccttaaaaataagaccgttggat-aaag 42521220  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    |||||||||| ||||||| |||||||||||    
T  42521219 gaggtccatcggatctaacagtgtatcacc 42521190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 40322295 - 40322225
Alignment:
Q  197 taaacgtttt-aaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaac 266  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||||||  || |||||||||||||| ||||    
T  40322295 taaacgttttcaaaatggtcttttatctttgttttaatcatcaatttgatcctattttattaattttaaac 40322225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 324
Target Start/End: Original strand, 43703109 - 43703237
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    ||||| |||||||||||||| ||||||| |  ||| ||||||||||| ||  |||||||||||||| |||  |||   |||||| |||||||||| ||||    
T  43703109 ttaaatgttttaaaatggtcttttatctatgctttcatcatcaatttggtactattttattaattttaaatttcttaaaaagaagaccgttggat-aaag 43703207  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    ||||| |||| |||||||  ||||||||||    
T  43703208 gaggtgcatcggatctaacggtgtatcacc 43703237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 40881168 - 40881245
Alignment:
Q  218 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||| ||||  |||||||||| |||||||||||||||||| ||| | |||  |||||| |||||||||||||||    
T  40881168 ttatctttatttttgtcatcaatttggtcatattttattaattttaaatccctaaaaaagaagaccgttggataaaag 40881245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 41767224 - 41767096
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||| |||||||||| |||||||| ||||| |||| | ||| ||| |||||||||||||| ||||||||   |||||| || |||||||  |||    
T  41767224 ttaaacgtttcaaaatggtcccttatctttattttagtcattattttggtcctattttattaattttaaacctcttaaaaagaagactgttggat-taag 41767126  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    |||||||||| |||||||  ||||||||||    
T  41767125 gaggtccatcggatctaacggtgtatcacc 41767096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 196 - 320
Target Start/End: Complemental strand, 44770674 - 44770550
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    ||||| ||||||||||||||||||| |||| ||||| ||||||||||  || |||||||||||||| ||||| ||   |||||| |||||||||| |||     
T  44770674 ttaaatgttttaaaatggtcctttagctttgttttagtcatcaatttgatcctattttattaattttaaaccccttaaaaagaagaccgttggat-aaat 44770576  T
Q  295 gaggtccatcagatctaaaagtgtat 320  Q
    |||||| ||| ||||||| |||||||    
T  44770575 gaggtctatcggatctaacagtgtat 44770550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 43416028 - 43415957
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacc 267  Q
    |||||||||| ||||||||| ||||||||| ||||| |||||| |||||||  ||||||||||||| |||||    
T  43416028 ttaaacgtttcaaaatggtcttttatctttgttttagtcatcattttagtccgattttattaattttaaacc 43415957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 44769749 - 44769862
Alignment:
Q  210 atggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaaggaggtccatcagat 308  Q
    |||||| ||||||||| ||||| ||||||||||  ||||||||||||||||| ||| | ||   || ||| || |||||||  |||||||||||||| ||    
T  44769749 atggtcatttatctttgttttagtcatcaatttgatcatattttattaattttaaaacccttaaaatgaagactgttggat--aaggaggtccatcatat 44769846  T
Q  309 ctaaaagtgtatcacc 324  Q
    |||| |||||||||||    
T  44769847 ctaacagtgtatcacc 44769862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 12820158 - 12820031
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||||||||  |||||||| |||||| ||||  || || |||| ||| |||||||||||||| ||| ||||   |||||| |||||||||| ||||    
T  12820158 ttaaacgttttaatttggtcctt-atctttgttttcgtcgtcgatttggtcctattttattaattttaaatctctcaaaaagaagaccgttggat-aaag 12820061  T
Q  295 gaggtccatcagatctaaaagtgtatcacc 324  Q
    ||||| ||||| ||||||  ||||||||||    
T  12820060 gaggttcatcatatctaactgtgtatcacc 12820031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 43414437 - 43414498
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttatta 257  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||||| ||  ||||||||||    
T  43414437 ttaaacgtttcaaaatggtcctttatctatgttttcatcatcaatttggtactattttatta 43414498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 23768545 - 23768471
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctcta 271  Q
    ||||| |||||||| |||||||| |||||| ||||  |||||||||| ||| |||||||||||||| ||| |||||    
T  23768545 ttaaatgttttaaattggtcctt-atctttgttttcgtcatcaatttggtcctattttattaattttaaatctcta 23768471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Original strand, 9189450 - 9189546
Alignment:
Q  196 ttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaa 292  Q
    |||||||||| ||  |||||||| |||||| |||   |||||||||| |||||||||||||||||| ||| | |||  |||||| |||||||||||||    
T  9189450 ttaaacgtttcaatttggtcctt-atctttgtttctgtcatcaatttggtcatattttattaattttaaatccctaaaaaagaagaccgttggataaa 9189546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 195 - 324
Target Start/End: Original strand, 32157 - 32285
Alignment:
Q  195 gttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaa 293  Q
    ||||||||||||||| ||||  ||||||||| |||||  ||||||||| ||| |||||||||||||| ||||| ||  ||||||| ||  |||||||||     
T  32157 gttaaacgttttaaattggttatttatctttgttttagccatcaatttggtcctattttattaattttaaaccccttagaaagaagactattggataaa- 32255  T
Q  294 ggaggtccatcagatctaaaagtgtatcacc 324  Q
     |||| ||||||||||||| | |||||||||    
T  32256 -gaggcccatcagatctaacaatgtatcacc 32285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 324
Target Start/End: Original strand, 27886 - 28016
Alignment:
Q  195 gttaaacgttttaaaatggtcctttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaaacc---gttggataa 291  Q
    ||||||||||| ||||||||| ||||||||| |||||  |||||| || ||| |||||||||||||| ||| | ||   ||||||  |    ||||||||    
T  27886 gttaaacgtttcaaaatggtcatttatctttgttttagccatcaagttggtcctattttattaattttaaatcccttaaaaagaagactattttggataa 27985  T
Q  292 aaggaggtccatcagatctaaaagtgtatcacc 324  Q
    |  ||||||||||||||||||||||||||||||    
T  27986 a--gaggtccatcagatctaaaagtgtatcacc 28016  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 85115 - 85038
Alignment:
Q  218 ttatctttcttttaatcatcaatttagtcatattttattaatttcaaacctctacgaaagaa-accgttggataaaag 294  Q
    |||||||| ||||  |||||||||| |||||||||||||||||| ||| | |||  |||||| |||||||||||||||    
T  85115 ttatctttatttttgtcatcaatttggtcatattttattaattttaaatccctaaaaaagaagaccgttggataaaag 85038  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 440
Target Start/End: Complemental strand, 48182 - 48147
Alignment:
Q  405 acacctccaatttcttaaatccagaaatcatcaaca 440  Q
    ||||||||||||||||||||||||||||| ||||||    
T  48182 acacctccaatttcttaaatccagaaatcgtcaaca 48147  T

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