View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11382_high_1 (Length: 733)

Name: NF11382_high_1
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11382_high_1
NF11382_high_1
[»] chr1 (3 HSPs)
chr1 (167-717)||(14202349-14202899)
chr1 (15-117)||(14203215-14203317)
chr1 (245-280)||(14202897-14202932)


Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 167 - 717
Target Start/End: Complemental strand, 14202899 - 14202349
Alignment:
Q  167 ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14202899 ttctcatcatgaccaatttatggagtagtcatattgggtgcttgaatatcatttcaaaacagttttcagcacttagaaatgtttattctcactctttgaa 14202800  T
Q  267 ctataaagtatttccgtagcagctaagtaatttttatagnnnnnnnnnnccttaaccatccaattctaataagggaaagggggcattaattaataatttc 366  Q
    |||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14202799 ctataaagtatttccgtagcagctaagtaatttttatagttttttttttccttaaccatccaattctaataagggaaaggggacattaattaataatttc 14202700  T
Q  367 gaattcttctaaataagtaatcatgattgaaagttattaattatttgaacacaatcaattgataaataatttttacggtttatatgacacactagaattt 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14202699 gaattcttctaaataagtaatcatgattgaaagttattaattatttgaacacaatcaattgataaataatttttacggtttatatgacacactagaattt 14202600  T
Q  467 ctttaataaatttgcttagcacaaaaagtagaataaaagttggggaattgatgaattgtgtaaagacttttttcatttctctgccttcgaatacaggact 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| |||||||||||||||||    
T  14202599 ctttaataaatttgcttagcacaaaaagtagaataaaagttggggaattgatgaattgtgcaaagacttttttcaatcctcttccttcgaatacaggact 14202500  T
Q  567 aaaataaattttgaaatgagatattttaaaatagaatcagcactttgaaccaaaataggcagatagcttgagtgtttgaatttttcatgtcttttaactt 666  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14202499 aaaataaattttgaaatgagatattttaaaatagaatcagcactttgaaccaaaataggcagatagcttgagtgtttgaatttttcatatcttttaactt 14202400  T
Q  667 ttgatcatgtatgaaacatatattctaggttattattaaagatgcatgcac 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14202399 ttgatcatgtatgaaacatatattctaggttattattaaagatgcatgcac 14202349  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 14203317 - 14203215
Alignment:
Q  15 agagacagaaatgacacgttctctattttgttggaatataatcttttgaattgctattttaagtaattatttattactagttctattattggcaaggaca 114  Q
    ||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14203317 agagacagaaatgacacattatccattttgtaggaatataatcttttgaattgctattttaagtaattatttattactagttctattattggcaaggaca 14203218  T
Q  115 ata 117  Q
    |||    
T  14203217 ata 14203215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 14202932 - 14202897
Alignment:
Q  245 atgtttattctcactctttgaactataaagtatttc 280  Q
    ||||||||||||||||||||||||||||||||||||    
T  14202932 atgtttattctcactctttgaactataaagtatttc 14202897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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