View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11382_high_16 (Length: 383)
Name: NF11382_high_16
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_high_16 |
 | |
|
| [»] scaffold0182 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 21)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 21689860 - 21689496
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21689860 |
tacttcataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
21689761 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21689760 |
tctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttccggtca |
21689661 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21689660 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgta |
21689561 |
T |
|
| Q |
301 |
ttttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21689560 |
ttttgctgcccacataagcttgtacttctctcctaactttagagatttattgccatgatggatag |
21689496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 21682097 - 21681733
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||| | | |||||||||||||||| || ||| ||||||||||| |||| || |
|
|
| T |
21682097 |
tacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaacattcatgtgccctggttcataaagcatg |
21681998 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||||||||| |||| |||||||||||| |||| | ||||||| ||||| | | ||| | |
|
|
| T |
21681997 |
gttttctccaagatatgtagcaaagaacatccatccacgaacaacatccatgataacttttcttcaaggctatgatagccttcaagagactcgccggtta |
21681898 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgta |
300 |
Q |
| |
|
| |||||||||||||| |||||| ||||||| || ||||||||||||| |||| ||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
21681897 |
aagttaaaacatcgtcgctaaaatggcccttcaattcatcaatgttatcagcaatttttttgtatagatccttttgaatgcttccagtgtttttgatgta |
21681798 |
T |
|
| Q |
301 |
ttttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
21681797 |
ttttgctgcccacataagcttgtacttctctcctaactttagatctgtattgccatgatggatag |
21681733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 21714630 - 21714266
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| |||| | | |||||||||||||| |||| ||| ||||||||||| ||||| || |
|
|
| T |
21714630 |
tacttgataaggaagttgattctccaacaaaagcacatccatcattacaagaacaagttgatcaaccttgatattcatttgccctggttcatcaagcttg |
21714531 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
|| |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
21714530 |
gctctctccaagatatgaagcaaagaacatccatccacgaacaacatccacgatagcttttcttcaaggctaccaaagccttcaagagaccaactggttg |
21714431 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgt |
299 |
Q |
| |
|
| | ||||||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||| ||||| || ||||||| |||| |
|
|
| T |
21714430 |
aagctaaaacatcgttgtcaaaatgacccttcagttcatcaatgttatctgcaatctttttgtgtagat-cctctggaatgtgtctggtgttttctatgt |
21714332 |
T |
|
| Q |
300 |
attttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| |||| | |||| |||||||||||| |
|
|
| T |
21714331 |
attttgctgcccacataagtttgtacttctctcctttcttcagatttggattgtcatgatggatag |
21714266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 21788669 - 21788312
Alignment:
| Q |
8 |
taaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctgcctttct |
107 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||| | | ||||||||||| ||||||| ||| |||| |||||| ||||| || |||||| |
|
|
| T |
21788669 |
taaggaagttgattctccaacagaagcacatccatcatcacaagaaccagttgatcaactttaatattcatgtgcccaggttcatcaagcttggctttct |
21788570 |
T |
|
| Q |
108 |
ccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatgttaa |
207 |
Q |
| |
|
| |||||||| | |||||| ||||||||||| |||||||||||||| ||||||||||| || || |||||||||| ||||| || | || || ||||| |
|
|
| T |
21788569 |
ctaagatatacaacaaagaacatccatccacgaacaacatccacgacagcttttcttcgaggcttccaaagccttcaagagacttgccagttaaagttaa |
21788470 |
T |
|
| Q |
208 |
aacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgtattttgc |
306 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||| |||| |||||||| |||| ||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
21788469 |
aacatcgtcgccaaaatgacccttcagttcatcaatgttatctgcaatctttttgtgcagat-cctctggaatgtgtccagtgttttcgatgtattttgc |
21788371 |
T |
|
| Q |
307 |
tgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || | | ||| |||||||||||| |
|
|
| T |
21788370 |
tgcccacataagcttgtacttctctcctaacttcaaatttgtgttgtcatgatggatag |
21788312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 21623640 - 21623276
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||| |||||| | |||||||| | ||||||||| |||||||| ||| ||||||||||| |||| || |
|
|
| T |
21623640 |
tacttcataaggcagttgattctccaacaaaaccacatcaatcatcacaagattccgttgatcaagcttaatattcatctgccctggttcatgaagcttg |
21623541 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
|| | |||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||||| || ||| |||||||||| ||||| |||| ||| | |
|
|
| T |
21623540 |
gctgtatccatgatatgcagcaaagaacatccatccacgaacaacatccacgacagcttttctttaatgctaccaaagccttcaagagactttccggtta |
21623441 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgta |
300 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||| |||||| |||||| |||| || ||||| | |||| |||||| ||| |||||||||||||| |
|
|
| T |
21623440 |
aagttaaaacatcgtcactaaaatgacccttcagttcatcaatattatcagcaatcttgttgtgcatatccttctgaacttttctggtgtttttgatgta |
21623341 |
T |
|
| Q |
301 |
ttttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
21623340 |
ttttgctgcccacataagcttgtacttctctcctaacttcagatttgtattgccatgatggatag |
21623276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 15714064 - 15713706
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||| ||||||| | | |||||||||| |||||||| || ||||||| | ||||| || |
|
|
| T |
15714064 |
tacttcataaggaagttgattctccaacaaaagcacatccattatcacaagatccagttgatcaagcttaatatttatgggccctgcgtgaacaa---tg |
15713968 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| || ||| |||| |||| || || |||| ||| | |
|
|
| T |
15713967 |
---ttatccaagatatgcagcaaagagcatccatccacgaacaacatccatgacagcttttcttctaggctaccaaatccttgaagtgactttccggtta |
15713871 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgt |
299 |
Q |
| |
|
| ||||||||||||||| |||||||| |||||||| ||||||||||||| |||| |||||||| || | ||||| |||||||||||||||||||||||| |
|
|
| T |
15713870 |
aagttaaaacatcgtcactaaaatgacacttcagttcatcaatgttatcagcaatctttttgtgcag-ttcctctagaatgcttccagtgtttttgatgt |
15713772 |
T |
|
| Q |
300 |
attttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| ||||||||| | ||||| |||||||||||| |
|
|
| T |
15713771 |
attttgccgcccacataagcttgtacttctcccctgactttagatttgtattgtcatgatggatag |
15713706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 21647187 - 21646826
Alignment:
| Q |
8 |
taaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctgcctttct |
107 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| |||||||| | | |||| |||||||||||||| ||| ||||||||||| |||| || |||||| |
|
|
| T |
21647187 |
taagggagttgattctccaacaaaagcacatccatcatcacaagaaccagtttatcaaccttaatattcatctgccctggttcatgaagcttggctttct |
21647088 |
T |
|
| Q |
108 |
ccaagatataaagcaaagagcatccat----ccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatg |
203 |
Q |
| |
|
| ||||||| |||||||| ||||||| |||| ||||| |||||||| | |||||||||||| ||| ||||||| ||||| || | |||||| | |
|
|
| T |
21647087 |
ctaagatatgcagcaaagaacatccatatatccacgaacaatatccacgacaacttttcttcaaggctacggaagcctttaagagacttgccggtcaaag |
21646988 |
T |
|
| Q |
204 |
ttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgtattt |
303 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||| ||| ||||| ||||||||||||||||| |
|
|
| T |
21646987 |
ttaaaacgtcgtcgctaaaatgacccttcagttcatcaatgttatctacaatctttttgtgtagatccttcttaattcttcccgtgtttttgatgtattt |
21646888 |
T |
|
| Q |
304 |
tgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||| || | | |||| |||||||||||| |
|
|
| T |
21646887 |
tgctgcccacataagcttgtatttctctcctatcttcagctttggattgtcatgatggatag |
21646826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 21772408 - 21772073
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||| | | ||||||||||||||||||| ||| ||| ||||||| ||| | |
|
|
| T |
21772408 |
tacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatgtgccatggttcattaagattc |
21772309 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||||||| | |||||||||||| ||| ||||||| | ||||| |||||| |
|
|
| T |
21772308 |
gctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttg |
21772209 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgt |
299 |
Q |
| |
|
| ||||||||||| || ||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||| ||| | |||| |||| |
|
|
| T |
21772208 |
aagttaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagat-cctctggaatgtatccgttattttctatgt |
21772110 |
T |
|
| Q |
300 |
attttgctgcccacataagcttgtacttctctcctaa |
336 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
21772109 |
attttgctgcccacataagtttgtacttctctgctaa |
21772073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 21664554 - 21664181
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcc-- |
98 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||| |||||||| | | ||||||||||||||||||||||||||| |||| ||| | | || |
|
|
| T |
21664554 |
tacttgataaggtagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatatccataggctctgggtcatccatccac |
21664455 |
T |
|
| Q |
99 |
-tgc--ctttc-tccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttc |
194 |
Q |
| |
|
| | | | | |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |||||||||| ||||| || | |
|
|
| T |
21664454 |
gtacaacatccatccaagatataaagcaaagagcatccatccacgaacaatatccacgacagcttttcttcaaggcttccaaagccttcaagagacttgc |
21664355 |
T |
|
| Q |
195 |
tggtcaatgttaaa---acatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtt |
291 |
Q |
| |
|
||| || |||||| ||||| || ||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||| || || || || || |
|
|
| T |
21664354 |
cggttaaagttaaaattacatcatcgtcaaaatgacccttcagttcatcgatgttatcaaaaatctttttgtgtagatcccgtggattgagtcttgtatt |
21664255 |
T |
|
| Q |
292 |
tttgatgtattttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||||||||| |
|
|
| T |
21664254 |
ttcaatgtattttgctgcccacataagcttgtacttccctcctaacttcagatctgtattgccatgatggatag |
21664181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 21628575 - 21628208
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttca----acaag |
96 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||| |||||||| | | |||||||||| ||||||||||||||||| ||| ||| |||| |
|
|
| T |
21628575 |
tacttcataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaagcttaatatccataggccttgggtcattaaacaa- |
21628477 |
T |
|
| Q |
97 |
cctgcctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctg |
196 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||| ||||| |||| |
|
|
| T |
21628476 |
cgtaactttctccaagatataaagcaaagagcatccatccacgaacaacatccacgacagcttttcttcaaggcatccaaagccttgaagagagtttccc |
21628377 |
T |
|
| Q |
197 |
gtcaatgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttg |
295 |
Q |
| |
|
|| || ||||||||||||| |||| |||||||||||| ||||||||||||| |||| ||||||||||| | ||||| |||| |||| |||||| |
|
|
| T |
21628376 |
gttaaatttaaaacatcgtcgctaaaacgacccttcagttcatcaatgttatcagcaatctttttgtgtag-ttcctctggaataagtccaatgttttct |
21628278 |
T |
|
| Q |
296 |
atgtattttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| || |||| | || ||||||||||||||| |
|
|
| T |
21628277 |
atgtattttgatgcccacacaagcttgtacttctctcctatgttcagatttgtactgccatgatggatag |
21628208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 21726343 - 21726008
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||| | | |||||||||||| |||||| ||| ||| ||||| | ||| |
|
|
| T |
21726343 |
tacttgataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccctaatattcatgtgccatggtttattaagatcc |
21726244 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| ||||||| | ||||| |||||| |
|
|
| T |
21726243 |
gctttctccaagatatacagcaaagaacatccatccacgaacaacatccacgacagcttttcttcaaggctacgaaagcctgcaagagaccatctggttg |
21726144 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgt |
299 |
Q |
| |
|
| | |||||||||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||| ||| ||||||| |||| |
|
|
| T |
21726143 |
aagctaaaacatcgtcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagat-cctctggaatgtgtccggtgttttctatgt |
21726045 |
T |
|
| Q |
300 |
attttgctgcccacataagcttgtacttctctcctaa |
336 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
21726044 |
attttgctgcccacataagtttgtactactctgctaa |
21726008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 21807863 - 21808230
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcc-- |
98 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||||||| |||| || | | |||||||||| ||||||||||| | ||||||| ||| ||| || |
|
|
| T |
21807863 |
tactttataaggcagttgattctccaacaaaagcacatccgttatcagaagaaccagttgatcaagcttaatatccacatgccctggctcatcaaaccac |
21807962 |
T |
|
| Q |
99 |
-tgcctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctgg |
197 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| |||||||||| ||||| | | || |
|
|
| T |
21807963 |
atgactgtctccaagatataaagcaaagagcatccatccacgaacaacatccatgacagcttttcttcaaggctaccaaagccttcaagagactggccgg |
21808062 |
T |
|
| Q |
198 |
tcaatgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttga |
296 |
Q |
| |
|
| || |||||||||||||| |||||||||||||||||| ||| ||||||||| |||| ||||||||||||| ||||| |||| || |||||| | |
|
|
| T |
21808063 |
ttaaagttaaaacatcgtcgccaaaatgacccttcagttcatcgatgttatcagcaatctttttgtgtagat-cctctagaataaagccgctgttttcta |
21808161 |
T |
|
| Q |
297 |
tgtattttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||||||| |||| | |||| ||||||||||||| |
|
|
| T |
21808162 |
tgtatttcgcagaccacataagcttgtacttctctcctaacttcagatttatatttccatgatggatag |
21808230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 21992622 - 21992286
Alignment:
| Q |
8 |
taaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctgcctttct |
107 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||| | | ||||||||||| ||||||| ||| |||| |||||| ||||| || |||||| |
|
|
| T |
21992622 |
taaggaagttgattctccaacagaagcacatccatcatcacaagaaccagttgatcaactttaatattcatgtgcccaggttcatcaagcttggctttct |
21992523 |
T |
|
| Q |
108 |
ccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatgttaa |
207 |
Q |
| |
|
| |||||||| | |||||| ||||||||||| ||||||||||| || ||||||||||| || || |||||||||| ||||| |||| | || ||||| |
|
|
| T |
21992522 |
ctaagatatacaacaaagaacatccatccacgaacaacatccatgacagcttttcttcgaggcttccaaagccttcaagagactttccagctaaagttaa |
21992423 |
T |
|
| Q |
208 |
aacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgtattttgct |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| | ||| |||||||||||||| | || | ||| | |||| ||||||||||||| |
|
|
| T |
21992422 |
aacatcgtcactaaaatgacccttcagttcatcaatgttatcgataatctttttgtgtagatcgcatggattaagtcctgcattttcgatgtattttgct |
21992323 |
T |
|
| Q |
308 |
gcccacataagcttgtacttctctcctaactttagat |
344 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
21992322 |
gcccacgtaagcttgtacttctctcctaacttcagat |
21992286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 2 - 365
Target Start/End: Complemental strand, 21785852 - 21785489
Alignment:
| Q |
2 |
acttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctgc |
101 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| |||||||| | | ||||||||||||||||||| ||| |||||||| || |||| || |
|
|
| T |
21785852 |
acttcataaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgatcaaccttaatattcatttgccctggtacatgaagcttgg |
21785753 |
T |
|
| Q |
102 |
ctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaa |
201 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| ||| ||||| |||| ||||| | | ||| || |
|
|
| T |
21785752 |
ctttctccaagatatgtagcaaagaacatccatccacaaacaacatccacgacagcttttcttcaaggctaccaaagtcttcaagagactggccggttaa |
21785653 |
T |
|
| Q |
202 |
tgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgtat |
301 |
Q |
| |
|
||||||||||| || ||||||||||||||||| || ||||||||| |||| |||||||||||||| | || ||| || | || | || |||| |
|
|
| T |
21785652 |
agttaaaacatcatcgctaaaatgacccttcagttcattaatgttatcggcaatctttttgtgtagatcgcgtggattgcggcctatattctcgaggtat |
21785553 |
T |
|
| Q |
302 |
tttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||| |||| | |||| |||||||||||| |
|
|
| T |
21785552 |
tttgcggcccacataagcttgtacttctctcctgtcttcagatttggattgtcatgatggatag |
21785489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 103 - 363
Target Start/End: Complemental strand, 21792356 - 21792096
Alignment:
| Q |
103 |
tttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaat |
202 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||| ||||| ||||| || ||||||||||| || ||| ||||||| || ||||| || | ||| || |
|
|
| T |
21792356 |
tttctccaagatatgcaacaaagaacatccatccacgaacaatatccatgacagcttttcttcgaggctaccaaagccgtcaagagacttgcgggttaaa |
21792257 |
T |
|
| Q |
203 |
gttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgtatt |
302 |
Q |
| |
|
||||||||||| || |||| || ||||||| ||||||||||||| |||| |||||||| ||||| || |||||||| |||| ||||||||||||| |
|
|
| T |
21792256 |
gttaaaacatcatcgctaaaacgatccttcagcgtatcaatgttatcggcaatctttttgtgcagatctttcagaatgctttcagtttttttgatgtatt |
21792157 |
T |
|
| Q |
303 |
ttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggat |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||| |
|
|
| T |
21792156 |
ctgctgcccacataagcttgtacttctctcctaactccagatctgtactgccatgatggat |
21792096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 21705084 - 21704726
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
||||| |||||| ||||||||||| ||||||||||||||| || |||||| ||| ||||||||||||||||||| ||| ||| | | | | || || |
|
|
| T |
21705084 |
tacttcataaggcagttgattctccaacaaaagcacatcctccctcacaagagccagttgatcaaccttaatattcatcggcagtaggtacataa---tg |
21704988 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
|| |||||||||| |||||||| |||||||||| ||||| |||||||| |||||||| ||||| | |||||||||| ||||| |||| ||| | |
|
|
| T |
21704987 |
---ttatccaagatatggagcaaagaacatccatccatgaacaatatccacgacagcttttcatcaaggcactcaaagccttgaagagagtttccggtta |
21704891 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgt |
299 |
Q |
| |
|
||||||||||| || |||| |||||||||||| |||||||||||| |||| ||||||||||| | ||||| |||| ||| ||||||| |||| |
|
|
| T |
21704890 |
gagttaaaacatcatcgctaaaacgacccttcagttcatcaatgttatctgcaatctttttgtgtag-ttcctctggaataagtccggtgttttctatgt |
21704792 |
T |
|
| Q |
300 |
attttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||| |
|
|
| T |
21704791 |
attttgctgcccacataagcttgtacttctctcctaacttcagagttggattgtcatgatggatag |
21704726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 101 - 344
Target Start/End: Complemental strand, 21764409 - 21764166
Alignment:
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||| ||||||||| ||||| |||| || | |
|
|
| T |
21764409 |
cctttctccaagagataaagcaaagagcatccatccacgaacaacatccacgacaacttttcttcaaggctatgaaagccttcaagagactttccagtta |
21764310 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgt |
299 |
Q |
| |
|
| ||||||||||| || |||| |||||||||||| ||| ||||||||| |||| |||| |||||| | ||||| || | | | ||||||| |||| |
|
|
| T |
21764309 |
aagttaaaacatcatcgctaaaacgacccttcagttcatcgatgttatcagcaatcttttggtgtag-ttcctctggattaagtgcggtgttttctatgt |
21764211 |
T |
|
| Q |
300 |
attttgctgcccacataagcttgtacttctctcctaactttagat |
344 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
21764210 |
attctgctgcccacttaagcttgtacttctctcctaacttcagat |
21764166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 21652507 - 21652183
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||| ||||| |||||||||||||||||| ||| |||||| |||| ||| || |
|
|
| T |
21652507 |
tacttgataaggaagttgattttccaacaaaagcacatccatcatca---------gttgatcaaccttaatattcatgtgccctgcttcatcaacgttg |
21652417 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||| |||||||||||||| | |||||||||||| |||||||||||||| ||||| || | || | |
|
|
| T |
21652416 |
gctttctccaagatatgcagcaacgaacatccatccacgaacaacatccacgacaacttttcttcaaggctatcaaagccttcaagagacttgccagtta |
21652317 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgt |
299 |
Q |
| |
|
| |||||||||||||| |||||||||||| |||| | ||| ||||| |||| ||||||||| ||| ||||| |||| || |||||| |||| |
|
|
| T |
21652316 |
aagttaaaacatcgtcgctaaaatgaccctttagttcgttaattttatcggcaatctttttgtgtcgat-cctctagaataaagccgttgttttctatgt |
21652218 |
T |
|
| Q |
300 |
attttgctgcccacataagcttgtacttctctcct |
334 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| |
|
|
| T |
21652217 |
attttgctgcccacataagcttatactcctctcct |
21652183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 365
Target Start/End: Complemental strand, 21745873 - 21745615
Alignment:
| Q |
107 |
tccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtcaatgtta |
206 |
Q |
| |
|
|||||||||| |||||||| |||||||| || || ||||||||||| |||||||||||||| | |||||||||| |||||||||| || || |||| |
|
|
| T |
21745873 |
tccaagatatggagcaaagaacatccatctacgaataacatccacgacagcttttcttcaaggcattcaaagccttgaagagaatttccagttaaagtta |
21745774 |
T |
|
| Q |
207 |
aaacatcgtcatcaaaatgacccttcagtttatcaatgttatcaacaatgtttttgtgtagatccctctgaatgcttccagtgtttttgatgtattttgc |
306 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||||||||||||||||| |||||||| ||||| || || || || || | || ||||||||| |
|
|
| T |
21745773 |
aaacatcgtcgctaaaacgacccttcagttcatcaatgttatcaacaatctttttgtgcagatcgtgtggattgtggcctgtattctcgaggtattttgc |
21745674 |
T |
|
| Q |
307 |
tgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||||| | |||| |||||||||||| |
|
|
| T |
21745673 |
tgcccacataagcttatactcttctcctgtctttagatttggattgtcatgatggatag |
21745615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 21764484 - 21764420
Alignment:
| Q |
8 |
taaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaat |
72 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||| | | |||||| |||||||||| |
|
|
| T |
21764484 |
taaggaagttgattctccaacaaaagcacatccatcatcacaagaaccagttgaccaaccttaat |
21764420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21792437 - 21792385
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatag |
53 |
Q |
| |
|
||||| |||||| ||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
21792437 |
tacttcataaggcagttgattctccaacaaaagcacatccatcatcacaatag |
21792385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25820 - 25588
Alignment:
| Q |
1 |
tacttgataaggaagttgattctctaacaaaagcacatccaccatcacaatagctagttgatcaaccttaatatccataggccctggttcaacaagcctg |
100 |
Q |
| |
|
||||| ||||||||||||||| || ||||||| ||||||||||||||||| | ||||||||||||||||||| ||| |||||| | | | | ||| |
|
|
| T |
25820 |
tacttcataaggaagttgattttccaacaaaaccacatccaccatcacaagaaaaagttgatcaaccttaatattcattttccctgggttattacgtctg |
25721 |
T |
|
| Q |
101 |
cctttctccaagatataaagcaaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttctggtca |
200 |
Q |
| |
|
| ||||||||||||| |||||||| ||||||||||| ||||||||| |||| |||||||||||||| || |||||||||| ||||| ||| | || | |
|
|
| T |
25720 |
gcattctccaagatatgtagcaaagaacatccatccacgaacaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttttagtta |
25621 |
T |
|
| Q |
201 |
atgttaaaacatcgtcatcaaaatgacccttca |
233 |
Q |
| |
|
| ||||||||||| || |||||||||||||| |
|
|
| T |
25620 |
aagttaaaacatcctcgctaaaatgacccttca |
25588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 25472 - 25393
Alignment:
| Q |
286 |
agtgtttttgatgtattttgctgcccacataagcttgtacttctctcctaactttagatgtttattgccatgatggatag |
365 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
25472 |
agtgttttctatgtattctgctgcccacttaagcttgtacttctctcctaacttcagatttttattgtcatgatggatag |
25393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 18192060 - 18192122
Alignment:
| Q |
121 |
caaagagcatccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttc |
183 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
18192060 |
caaagaacatccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttc |
18192122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University