View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_high_19 (Length: 339)
Name: NF11382_high_19
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 50751198 - 50751535
Alignment:
| Q |
1 |
gcattcaatgataaaattgatgaactctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttcaccactcttcggtttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50751198 |
gcattcaatgataaaattgatgaactctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttcaccactcttcggtttca |
50751297 |
T |
|
| Q |
101 |
ccgccggtaactgccacgctggactcgccgtcgctgttttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacaaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50751298 |
ccgccggtaactgccacgctggactcgccgtcgctgttttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacgaaaat |
50751397 |
T |
|
| Q |
201 |
atacggaagcggttgaagaattgtcttatactgactatttgaaaattg-------------cttgatttggatttaaaagcttgggttgttattgatttg |
287 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50751398 |
atacggaagcgattgaagaattgtcttatactgactatttgaaaattgcttgatttggattcttgatttggatttaaaagcttgggttgttattgatttg |
50751497 |
T |
|
| Q |
288 |
gattttgcagattatgatgttttttgatgctgttaatg |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
50751498 |
gattttgcagattatgatgttttttgatgctgttaatg |
50751535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 4323319 - 4322982
Alignment:
| Q |
1 |
gcattcaatgataaaattgatgaactctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttcaccactcttcggtttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4323319 |
gcattcaatgataaaattgatgaactctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttcaccactcttcggtttca |
4323220 |
T |
|
| Q |
101 |
ccgccggtaactgccacgctggactcgccgtcgctgttttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacaaaaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4323219 |
ccgccggtaactgccacgctggactcgccgtcgctgttttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacgaaaat |
4323120 |
T |
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| Q |
201 |
atacggaagcggttgaagaattgtcttatactgactatttgaaaattgcttgatttg-------------gatttaaaagcttgggttgttattgatttg |
287 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4323119 |
atacggaagcgattgaagaattgtcttatactgactatttgaaaattgcttgatttggattcttgatttggatttaaaagcttgggttgttattgatttg |
4323020 |
T |
|
| Q |
288 |
gattttgcagattatgatgttttttgatgctgttaatg |
325 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4323019 |
gattttgcagattatgatgttttttgatgctgttaatg |
4322982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 15287563 - 15287674
Alignment:
| Q |
26 |
tctatggtttctccttcagcaaagaagctaatccagtcacaatcttcattcctctttcaccactcttcggtttcaccgccggtaactgccacgctggact |
125 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15287563 |
tctatggtttctccttcagcaaagaggctaatccagtcacaaccttcattcctctttcaccactcttcggtttcaccgccggtaactgccacgcaggact |
15287662 |
T |
|
| Q |
126 |
cgccgtcgctgt |
137 |
Q |
| |
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|||| ||||||| |
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| T |
15287663 |
cgccatcgctgt |
15287674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 15287898 - 15287995
Alignment:
| Q |
139 |
ttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacaaaaatatacggaagcggttgaagaattgtcttatactgact |
236 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||| |
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| T |
15287898 |
ttcgccgcctccgacacgacggtgacgatctgcttcaaccggtcctttttgccgacgaaaatatacggaagcgattgaagaatcgtcttatactgact |
15287995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 302
Target Start/End: Original strand, 46899623 - 46899767
Alignment:
| Q |
139 |
ttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacaaaaatatacggaagcggttgaagaattgtcttatactgactat |
238 |
Q |
| |
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|||| |||||| ||||||| |||| |||||| ||| ||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||| |
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| T |
46899623 |
ttcgtcgcctcagacacgatggtgacgatctactttaaccggtccttttggccgacgaaaatatacggaagcgattgaagaattgtcttatac------- |
46899715 |
T |
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| Q |
239 |
ttgaaaattgcttgatttggatttaaaagcttgggttgttattgatttggattttgcagattat |
302 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46899716 |
------------tgatttggatttaaaagcttgggtggttattgatttggattttgcagattat |
46899767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 46899321 - 46899389
Alignment:
| Q |
57 |
tccagtcacaatcttcattcctctttcaccactcttcggtttcaccgccggtaactgccacgctggact |
125 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
46899321 |
tccagtcacaaccttcattcctctttcaccaatcttcggtttcaccgccggtaactgccacactggact |
46899389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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