View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11382_high_2 (Length: 702)
Name: NF11382_high_2
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 370 - 689
Target Start/End: Original strand, 3929628 - 3929947
Alignment:
| Q |
370 |
atatccatagacaacttcgatattaaaattgaagcaaaatttcccaacttcaaagctaaaaagcaacaaattagttactatgatcaaattttcatcaaat |
469 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3929628 |
atatccatagacaacttcaatattaaaattgaagcaaaatttcccaacgtcaaagctaaaaagcaacaaattagttactatgatcgaattttcatcaaat |
3929727 |
T |
|
| Q |
470 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3929728 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
3929827 |
T |
|
| Q |
570 |
ttttccaagagaaattagattcaaatcctaacnnnnnnntaaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaaa |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3929828 |
ttttccaagagaaattagattcaaatcctaacaacaaaataaaactctatcatctaaacatctaaagaaaataactgtgaatccatgcaatgtaatcaaa |
3929927 |
T |
|
| Q |
670 |
tcttctaagccctttcgcct |
689 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3929928 |
tcttctaagccctttcgcct |
3929947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 3929207 - 3929520
Alignment:
| Q |
17 |
caggatcaaatactaatttgacatatttgagagcgccctacaaagtcaaagacaagcttgatgatttactcaacaattatgtcttgagaattgcctctac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3929207 |
caggatcaaatactaatttgacatatttgagagcgccctacaaagtcaaagacaagcttggtgatttactcaacaattatgtcttgagaattgcctctac |
3929306 |
T |
|
| Q |
117 |
actatacaaaagctattgagaatcaaaatacattagatactctttctttcnnnnnnngtatcagtacatttgatagccttgggagaggcttatcacacca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3929307 |
actatacaaaagctattgagaatcaaaatacattagatactct--ctttctttttttgtatcagtacatttgatagccttgggagaggcttatcacaaca |
3929404 |
T |
|
| Q |
217 |
ttgccaaagctcaattactgtatatttcagtgttgcctattaattaatcattgcataccaggtttttattgctaaattgatttagtgtagtaaatttgac |
316 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3929405 |
ttgccaaagctcaattagtgtatatttcagtgttgcctattaactaatcaatgcataccaggtttttattgctaaattgatttagtgtagtaaatttgac |
3929504 |
T |
|
| Q |
317 |
tacctgataaatgatt |
332 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3929505 |
tacctgataaatgatt |
3929520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University