View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11382_high_23 (Length: 301)
Name: NF11382_high_23
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_high_23 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
| [»] scaffold0275 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 26720737 - 26721014
Alignment:
| Q |
7 |
gagaagaaggaagaagcatcggaggaattgaagcggagaagaagctttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatcc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26720737 |
gagaagaaggaagaagcatcggaggaattgaagcggagaagaagctttcactctcttccatgtcttctctactttcacagttgtatttctcctcttatcc |
26720836 |
T |
|
| Q |
107 |
ctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
26720837 |
ctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctcttgcgaccacctctctaggtctcttcatcccgttgcctcttttgattcccgttc |
26720936 |
T |
|
| Q |
207 |
attcaacaccaacaccatgcgccagtgcgaggaacactcagatgagtccaatgtttccgattgtcgttgatggctctt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26720937 |
attcaacaccaacaccatgcgccagtgcgaggaacactcagatgagtccaatgtttccgattgtcgttgatggctctt |
26721014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 8541278 - 8541428
Alignment:
| Q |
53 |
ttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc |
152 |
Q |
| |
|
|||||||||||| ||||||| || ||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
8541278 |
ttcactctcttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcgactcgacctccaccgtcagcggtggattttctc |
8541377 |
T |
|
| Q |
153 |
ttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccg |
203 |
Q |
| |
|
|||| |||||||||||| ||||| | ||| |||||||||| || |||||| |
|
|
| T |
8541378 |
ctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg |
8541428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 37618754 - 37618670
Alignment:
| Q |
52 |
tttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc |
136 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||| || |||||||| |
|
|
| T |
37618754 |
tttcactctcttccatgtcttttctactttcaccgtcgtatttctcctctcatccctcgccgtcgtcgactcaactgccaccgtc |
37618670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 44161950 - 44162063
Alignment:
| Q |
166 |
tctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaac------accatgcgccagtgcgaggaacactcagatgagtccaatg |
259 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
44161950 |
tctaggtctctatgtcccgttgcttcttccgcttcccgttcattcaacaccaacatcaacaccatgcgccagtatgatgaacactctgatgagtccaatg |
44162049 |
T |
|
| Q |
260 |
tttccgattgtcgt |
273 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
44162050 |
ttgccgatcgtcgt |
44162063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 52528754 - 52528719
Alignment:
| Q |
7 |
gagaagaaggaagaagcatcggaggaattgaagcgg |
42 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
52528754 |
gagaagaaggaagaagcatcggaggaactgaagcgg |
52528719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 44161166 - 44161212
Alignment:
| Q |
92 |
tttctcctcttatccctcgccttcgtcgactcgacctccaccgtcag |
138 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
44161166 |
tttctcctctcatccctggccgtcgtcgactcgaccgccaccgtcag |
44161212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 39 - 284
Target Start/End: Complemental strand, 45118155 - 45117910
Alignment:
| Q |
39 |
gcggagaagaagctttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcag |
138 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45118155 |
gcggaggagaagctttcactctcttccatgtcttctctactttcacaatcgtatttctcctctcatccctcgccttcgtcgactcgacctccaccgtcag |
45118056 |
T |
|
| Q |
139 |
tagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcgagg |
238 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45118055 |
cggtgaattttctcctgcagcctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtacgagg |
45117956 |
T |
|
| Q |
239 |
aacactcagatgagtccaatgtttccgattgtcgttgatggctctt |
284 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
45117955 |
aacactcagacaagtccaatgtttccgatcgtcgttgatggctctt |
45117910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 19769218 - 19769309
Alignment:
| Q |
141 |
gtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagt |
232 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19769218 |
gtgaattttctcctccggcctcctctctaggtctctccttcccgttgcctcttccgcttcccgttcattcaacaccaacgccatgcgccagt |
19769309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 6919885 - 6919971
Alignment:
| Q |
52 |
tttcactctcttcaat--gtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc |
136 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||| |||| |||||||||| |||||||||| ||||||||| |||| |||||||| |
|
|
| T |
6919885 |
tttcactctcttccatacgtcttttctactttcacaatcgtgtttctcctctcatccctcgccgtcgtcgacttgaccgccaccgtc |
6919971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 38239992 - 38239906
Alignment:
| Q |
52 |
tttcactctcttcaat--gtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc |
136 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||| |||| |||||||||| |||||||||| ||||||||| |||| |||||||| |
|
|
| T |
38239992 |
tttcactctcttccatacgtcttttctactttcacaatcgtgtttctcctctcatccctcgccgtcgtcgacttgaccgccaccgtc |
38239906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 51 - 284
Target Start/End: Original strand, 2985921 - 2986154
Alignment:
| Q |
51 |
ctttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttc |
150 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2985921 |
ctttcactctcttccatgtcttctctactttcacaatcgtatttctcctctcatccctcgccttcgtcgactcgacctccaccgtcagcggtgaattttc |
2986020 |
T |
|
| Q |
151 |
tcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcgaggaacactcagatg |
250 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
2986021 |
tcctgctgcctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacatcatgcgccagtacgaggaacactcagatg |
2986120 |
T |
|
| Q |
251 |
agtccaatgtttccgattgtcgttgatggctctt |
284 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
2986121 |
agtccaatgtttccgatcgtcgttgatggctctt |
2986154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 10496097 - 10495950
Alignment:
| Q |
114 |
tcgtcgactcgacctccaccgtcagtagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaac |
213 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||||||||| ||| |||||||| ||||||||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
10496097 |
tcgttgactcgaccgccaccgtcaacgttgaattttctcccgcggcctcctctataggtctctctatcccgttgcctcttctgtttcccgttcattcaac |
10495998 |
T |
|
| Q |
214 |
accaacaccatgcgccagtgcgaggaacactcagatgagtccaatgtt |
261 |
Q |
| |
|
|| |||||||||||| ||| ||| |||||||| |||||||||||||| |
|
|
| T |
10495997 |
actaacaccatgcgctagtacgatgaacactctaatgagtccaatgtt |
10495950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 2985882 - 2985927
Alignment:
| Q |
39 |
gcggagaagaagctttcactctcttcaatgtcttctctactttcac |
84 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2985882 |
gcggagaagaagctttcactctcttccatgtcttctctactttcac |
2985927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 98110 - 98248
Alignment:
| Q |
135 |
tcagtagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgc |
234 |
Q |
| |
|
|||| ||||||||||||| | | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
98110 |
tcagcagtgaattttctcctctggcctcctctctaggtctctctgtcccgttgcctcttccgcttcccgttcattcaacaccaacgccatgcgccagtac |
98209 |
T |
|
| Q |
235 |
gaggaacactcagatgagtccaatgtttccgattgtcgt |
273 |
Q |
| |
|
|| |||||||| ||| ||||||||||| ||||| ||||| |
|
|
| T |
98210 |
gacgaacactctgataagtccaatgttgccgatcgtcgt |
98248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 53 - 203
Target Start/End: Original strand, 23820613 - 23820763
Alignment:
| Q |
53 |
ttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc |
152 |
Q |
| |
|
|||||||||||| ||||||| || ||||||||||||||||||||| ||| ||| ||||| |||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
23820613 |
ttcactctcttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcgactcgaccgccaccgtcagcggtggattttctc |
23820712 |
T |
|
| Q |
153 |
ttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccg |
203 |
Q |
| |
|
|||| |||||||||||| ||||| | ||| |||||||||| || |||||| |
|
|
| T |
23820713 |
ctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg |
23820763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 40172993 - 40172843
Alignment:
| Q |
53 |
ttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc |
152 |
Q |
| |
|
|||||||||||| ||||||| || ||||||||||||||||||||| ||| ||| ||||| |||||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
40172993 |
ttcactctcttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcgactcgaccgccaccgtcagcggtggattttctc |
40172894 |
T |
|
| Q |
153 |
ttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccg |
203 |
Q |
| |
|
|||| |||||||||||| ||||| | ||| |||||||||| || |||||| |
|
|
| T |
40172893 |
ctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg |
40172843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 13863468 - 13863433
Alignment:
| Q |
7 |
gagaagaaggaagaagcatcggaggaattgaagcgg |
42 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13863468 |
gagaagaaggaagaagcatcggaggaactgaagcgg |
13863433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 246442 - 246556
Alignment:
| Q |
159 |
cctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcgaggaacactcagatgagtccaat |
258 |
Q |
| |
|
||||||||| |||||||| | ||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||| ||| ||||| |||||| |
|
|
| T |
246442 |
cctcctctccaggtctctccgtcctgttgcctcttccgcttcccgttcattcaacaccaacgccatgcgccagtacgacgaacgctccgatgattccaat |
246541 |
T |
|
| Q |
259 |
gtttccgattgtcgt |
273 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
246542 |
gttgccgattctcgt |
246556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 53537276 - 53537338
Alignment:
| Q |
74 |
tctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc |
136 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| ||||||||| |||| |||||||| |
|
|
| T |
53537276 |
tctactttcacagtcgtgtttctcctctcatccctcgccgtcgtcgacttgaccgccaccgtc |
53537338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 53689636 - 53689676
Alignment:
| Q |
85 |
agtcgtatttctcctcttatccctcgccttcgtcgactcga |
125 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
53689636 |
agtcgtatttctcctcccatccctcgccgtcgtcgactcga |
53689676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0275 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0275
Description:
Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 23003 - 23073
Alignment:
| Q |
82 |
cacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc |
152 |
Q |
| |
|
|||||||||||||||||||| |||||| | | |||| |||| |||| |||||||||| |||||||||||| |
|
|
| T |
23003 |
cacagtcgtatttctcctctcatccctggtcgtcgtggacttgaccgccaccgtcagcggtgaattttctc |
23073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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