View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_high_4 (Length: 585)
Name: NF11382_high_4
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 24069202 - 24069538
Alignment:
| Q |
1 |
aattacaataactcaaaccatgctaaaggtaattctagtgaaaacagcagcaacactgaacaaggaactcatagtaatgaaaattatagaggaagaggag |
100 |
Q |
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| T |
24069202 |
aattacaataactcaaactatgctaaaggcaattctagtgaaaacagcagcaacactgaacaaggaactcatagtaatgaaaattatagaggaagaggag |
24069301 |
T |
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| Q |
101 |
gtagaggtggtcgaggttttagagggagagggagaaaatttgataaaagccacatacagtgttataattgtgagaaatatgggcatttttctgatgagtg |
200 |
Q |
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| T |
24069302 |
gtagaggtggtcgaggttttagagggagagggagaaaatttgataaaagccacatacagtgttataattgtgagagatatgggcattttgctgatgagtg |
24069401 |
T |
|
| Q |
201 |
ctacagcaatattaatagtgctgatgctaaactggccgaagaagaggaggagatggaggaatctctgttgatggctattgaagaaagggagagtagtgat |
300 |
Q |
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| T |
24069402 |
ctacaacaatgttaatagtgctgatgctaaactggccgaagaagaggaggagatagaggaatctctgttgatggctattgaagaaagggagagtagtgat |
24069501 |
T |
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| Q |
301 |
gaaatagtgcatatggtgacaactaaggtggaaggtg |
337 |
Q |
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| T |
24069502 |
gaaatagtgcatatggtgacaactaaggaggaaggtg |
24069538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 325 - 570
Target Start/End: Original strand, 24069667 - 24069912
Alignment:
| Q |
325 |
aaggtggaaggtgtggggaaggtgatgataagaaagaaggatggctcgttgtgcttcattactggtgtgctctatgtgccaggaatgaagagtaacctgt |
424 |
Q |
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| T |
24069667 |
aaggtggaaggtgtggggaaggtgatgataagaaagaaggatggctcgttgtgcttcattactggtgtgctctatgtgccaggaatgaagagtaacctgt |
24069766 |
T |
|
| Q |
425 |
tgagtattggacaactgttagagaagggatataggatggtgcttgaagacagggccatgaaggtgtatgatactgaacaaaggttacaagtgaaggcaaa |
524 |
Q |
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| T |
24069767 |
tgagtattggacaactgttagagaagggatataggatggtgcttgaagataaggccatgaaggtgtatgatactgaacagaggttactggtgaaggcaac |
24069866 |
T |
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| Q |
525 |
tctctccaaaaacaggatattcaaagttgagttgggagtgttgatg |
570 |
Q |
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| T |
24069867 |
tctctccaaaaacaggatattcaaagttgagttgggagtgttgatg |
24069912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 325 - 467
Target Start/End: Complemental strand, 13625324 - 13625182
Alignment:
| Q |
325 |
aaggtggaaggtgtggggaaggtgatgataagaaagaaggatggctcgttgtgcttcattactggtgtgctctatgtgccaggaatgaagagtaacctgt |
424 |
Q |
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| T |
13625324 |
aaggtggaaggtgtaggaaaagtgaaaataaaaaagaaatatggttctgagtgcttcatatctggtgtgctatatgtgccaggaatgaaaagtaacttgt |
13625225 |
T |
|
| Q |
425 |
tgagtattggacaactgttagagaagggatataggatggtgct |
467 |
Q |
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| T |
13625224 |
tgagtattggacaactcctggagaagggttacagaatggtgct |
13625182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 467
Target Start/End: Original strand, 40475552 - 40475645
Alignment:
| Q |
374 |
tgtgcttcattactggtgtgctctatgtgccaggaatgaagagtaacctgttgagtattggacaactgttagagaagggatataggatggtgct |
467 |
Q |
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| T |
40475552 |
tgtgcttcatatctggtgtgctatatgtgccaggaatgaaaagtaatttgttgagtattggacaactcttggagaagggttacagaatggtgct |
40475645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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