View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_high_40 (Length: 242)
Name: NF11382_high_40
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_high_40 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 22882428 - 22882632
Alignment:
| Q |
35 |
ttattatttctattttcccctagctagtatggaagttggtaacagtaggggtgtctataacttaatgcacagtaaagccatgcataaagggaag-nnnnn |
133 |
Q |
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| T |
22882428 |
ttattatttctattttcccctagctagtatggaagttggtaacagtaggggtgtctataacttaatgcacagtaaagccgtgtataaagggaagaaaaaa |
22882527 |
T |
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| Q |
134 |
nnnncctattactgtgttagcttaacaacatagtactcgattgtcttgtgaatcaggtaggtaacttcaaatctcacatcaataaaattgagatttgtga |
233 |
Q |
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| T |
22882528 |
aaaacctattactgtattagcttaacaacatagtactcgattgtcttgtgaatc----gggtaacttcaaatctcgcatcaataaaattgagatttgtga |
22882623 |
T |
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| Q |
234 |
ttcaagtat |
242 |
Q |
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| T |
22882624 |
tacaagtat |
22882632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 22934092 - 22934296
Alignment:
| Q |
35 |
ttattatttctattttcccctagctagtatggaagttggtaacagtaggggtgtctataacttaatgcacagtaaagccatgcataaagggaag-nnnnn |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
22934092 |
ttattatttctattttcccctagctagtatggaagttggtaacagtaggggtgtctataacttaatgcacagtaaagccgtgtataaagggaagaaaaaa |
22934191 |
T |
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| Q |
134 |
nnnncctattactgtgttagcttaacaacatagtactcgattgtcttgtgaatcaggtaggtaacttcaaatctcacatcaataaaattgagatttgtga |
233 |
Q |
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| T |
22934192 |
aaaacctattactgtattagcttaacaacatagtactcgattgtcttgtgaatc----gggtaacttcaaatctcgcatcaataaaattgagatttgtga |
22934287 |
T |
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| Q |
234 |
ttcaagtat |
242 |
Q |
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| T |
22934288 |
tacaagtat |
22934296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 44569890 - 44569930
Alignment:
| Q |
191 |
taggtaacttcaaatctcacatcaataaaattgagatttgt |
231 |
Q |
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| T |
44569890 |
taggtaattttaaatctcacatcaataaaatttagatttgt |
44569930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 26639681 - 26639641
Alignment:
| Q |
193 |
ggtaacttcaaatctcacatcaataaaattgagatttgtga |
233 |
Q |
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| T |
26639681 |
ggtaactccaaatctcacatcaataaaatttagatatgtga |
26639641 |
T |
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