View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_high_43 (Length: 239)
Name: NF11382_high_43
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 38055136 - 38054934
Alignment:
| Q |
20 |
cacgttatttttcaagaaatgagtcacttaatgcatgggataaatagtttgtcactaattaattagtaaagtttacaccacnnnnnnnnnnnnnntcaat |
119 |
Q |
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| T |
38055136 |
cacgttatttttcaagagatgagtcacttaatacatgggataaatagtttgtcactaattaattagtaaagtttacaccacaaaaaaaaaa----tcaat |
38055041 |
T |
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| Q |
120 |
caattaagtttaatattttgtatatctttcaaataagaattagaatatttataaaacacgagtatgcatgtcgtattttataattataggaataaacatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38055040 |
caattaagtttaatattttgtatatctttcaaataagaattagaatatttataaaacacgagtatgcatgtcgtattttataattataggaataaacatg |
38054941 |
T |
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| Q |
220 |
taaaact |
226 |
Q |
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||||||| |
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| T |
38054940 |
taaaact |
38054934 |
T |
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