View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11382_high_7 (Length: 463)
Name: NF11382_high_7
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 40455715 - 40455258
Alignment:
| Q |
1 |
aagtgaagtgcagcatcatgatgttagtatgtttgacatctcatatacaaaaatattttgtgaaaataaattatcttgtgaggatcactccgcaggtact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40455715 |
aagtgaagtgcagcatcatgatgttagtatgtttgacatctcatatacaaaaatattttgtgaaaataaattatcttgtgaggatcactccgcaggtact |
40455616 |
T |
|
| Q |
101 |
gagccaatcctaaatatggatctattaactttagacaatacaacgtctcctgatcataaccaactagctcaatcttctccacaaattcaacttgactctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40455615 |
gagccaatcctaaatatggatctattaactttagacaatacaacgtctcctgatcataaccaactagctcaatcttctccacaaattcaacttgactctt |
40455516 |
T |
|
| Q |
201 |
caacggtaactcttgatcctctccctattaatacaagtatagatgaagttgatcttgtttttga------------ttctattttaaatgaaattaatcc |
288 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
40455515 |
caacggtaactcttgatcctctccctattgatacaagtatagatgaagttgatcttgtttttgattctgaaattgattctgttttaaatgaaattaatcc |
40455416 |
T |
|
| Q |
289 |
ttatttgcatgataccaccaacacacctaacactgaatctactaatgtcaaatatgatcttccaacccgttctaaccgtggtaaacctcccgtcagatat |
388 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40455415 |
ttatttgcatgataccaccaaaacacctaacactgaatctactaatgtcaaatatgatcttccaacccgttctaacagtggtaaacctcccgtcagatat |
40455316 |
T |
|
| Q |
389 |
gaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcaca |
446 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40455315 |
gaaccagacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcaca |
40455258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 165 - 446
Target Start/End: Original strand, 32202097 - 32202390
Alignment:
| Q |
165 |
tagctcaatcttctccacaaattcaacttgactcttcaacggtaactcttgatcctctccctattaatacaagtatagatgaagttgatcttgtttttga |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32202097 |
tagctcaatcttctccacaaattcaacttgactcttcaacggtaactcttgatcctctccctattgatacaagtatagatgaagttgatcttgtttttga |
32202196 |
T |
|
| Q |
265 |
ttcta------------ttttaaatgaaattaatccttatttgcatgataccaccaacacacctaacactgaatctactaatgtcaaatatgatcttcca |
352 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32202197 |
ttctgaaattgattctgttttaaatgaaattaatccttatttgcatgataccaccaacacacctaacactgaatctactaatgtcaaatatgatcttcca |
32202296 |
T |
|
| Q |
353 |
acccgttctaaccgtggtaaacctcccgtcagatatgaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcaca |
446 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32202297 |
acccgttctaactgtggtaaacctcccgtcagatatgaaccagacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcaca |
32202390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 68 - 446
Target Start/End: Complemental strand, 56391685 - 56391304
Alignment:
| Q |
68 |
aaattatcttgtgaggatcactccgcaggtactgagccaatcctaaatatggatctattaactttagacaatacaacgtctcctgatcataaccaactag |
167 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||| |||||||||| | | |||||| |||||| |||| ||||||||| |||||||| |
|
|
| T |
56391685 |
aaattatcttgtgaggatcactctgcaggaagtgagccaatcttaaatatggacattccacttttagataatacagtgtcttctgatcatatccaactag |
56391586 |
T |
|
| Q |
168 |
ctcaatcttctccacaaattcaacttgactcttcaacggtaactcttgatcctctccctattaatacaagtatagatgaagttgatcttgtttttgattc |
267 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||| |||| ||||| ||||| ||| | ||||||| || |||||||||||||| | ||||| |||| |
|
|
| T |
56391585 |
ctcaatcttctccaaaggttcaacatgactcttcagaggtatctctttatcctatccttgataatacacatacagatgaagttgatcctatttttaattc |
56391486 |
T |
|
| Q |
268 |
t---attttaaatgaaattaatccttatttgcatgataccaccaacacacctaacactgaatctactaatgtcaaatatgatcttccaacccgttctaac |
364 |
Q |
| |
|
| | | |||||||||||||| ||| ||||| ||||||| ||||| ||||||||| || |||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
56391485 |
tgaaactgatcatgaaattaatcctggtttacatgagaccaccatcacacttaacactgagtcgactatcgtccaatatattcttccaccccgttctaat |
56391386 |
T |
|
| Q |
365 |
cgtggtaaacctcccgtcagatatgaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcaca |
446 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
56391385 |
cgtggtcaacctcctgtcagatatgaaccagaccctcaatccaaagctaaatatcccattagtaattatgtgtcaactcaca |
56391304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 68 - 446
Target Start/End: Complemental strand, 27515926 - 27515545
Alignment:
| Q |
68 |
aaattatcttgtgaggatcactccgcaggtactgagccaatcctaaatatggatctattaactttagacaatacaacgtctcctgatcataaccaactag |
167 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||| |||||||||| | | |||||| ||||||| |||| ||||||||| |||||||| |
|
|
| T |
27515926 |
aaattatcttgtgaggatcactctgcaggaagtgagccaatcttaaatatggacattccacttttagataatacaatgtcttctgatcatatccaactag |
27515827 |
T |
|
| Q |
168 |
ctcaatcttctccacaaattcaacttgactcttcaacggtaactcttgatcctctccctattaatacaagtatagatgaagttgatcttgtttttgattc |
267 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||| |||| ||||| ||||| ||| | ||||||| | | ||||| |||||| ||||||| |||| |
|
|
| T |
27515826 |
ctcaatcttctccaaaggttcaacatgactcttcagaggtatctctttatcctatccttgataatacacattcatatgaaattgatcctgtttttaattc |
27515727 |
T |
|
| Q |
268 |
tattttaaat---gaaattaatccttatttgcatgataccaccaacacacctaacactgaatctactaatgtcaaatatgatcttccaacccgttctaac |
364 |
Q |
| |
|
|| || || |||||| ||||| ||| ||||| ||||||| ||||||||||||||| || |||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
27515726 |
taaaatagatcatgaaattgatcctggtttacatgagaccaccatcacacctaacactgagtcgactatcgtccaatatattcttccaccccgttctaat |
27515627 |
T |
|
| Q |
365 |
cgtggtaaacctcccgtcagatatgaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcaca |
446 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
27515626 |
cgtggtcaacctcctgtcagatatgaaccagaccctcaatcaaaagctaaatatcccattagtaattatgtgtcaactcaca |
27515545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 68 - 446
Target Start/End: Original strand, 39743774 - 39744155
Alignment:
| Q |
68 |
aaattatcttgtgaggatcactccgcaggtactgagccaatcctaaatatggatctattaactttagacaatacaacgtctcctgatcataaccaactag |
167 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||| |||||| ||| | | |||||| |||||| |||| ||||||||| |||||||| |
|
|
| T |
39743774 |
aaattatcttgtgaggatcactctgcaggaagtgagccaatcttaaatacggacattccacttttagataatacagtgtcttctgatcatatccaactag |
39743873 |
T |
|
| Q |
168 |
ctcaatcttctccacaaattcaacttgactcttcaacggtaactcttgatcctctccctattaatacaagtatagatgaagttgatcttgtttttgattc |
267 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||| |||| ||||| ||||| ||| | ||||||| || |||||||||||||| ||||||| |||| |
|
|
| T |
39743874 |
ctcaatcttctccaaaggttcaacatgactcttcagaggtatctctttatcctatccttgataatacacatacagatgaagttgatcctgtttttaattc |
39743973 |
T |
|
| Q |
268 |
t---attttaaatgaaattaatccttatttgcatgataccaccaacacacctaacactgaatctactaatgtcaaatatgatcttccaacccgttctaac |
364 |
Q |
| |
|
| | | |||||||| || || ||| ||||| ||||||| ||||||||||||||| || |||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
39743974 |
tgaaactgatcatgaaattgattctggtttacatgagaccaccatcacacctaacactgagtcgactatcgtccaatatattcttccaccccgttctaat |
39744073 |
T |
|
| Q |
365 |
cgtggtaaacctcccgtcagatatgaaccatacctccaatccaaagtaaaatatcccattagtaattatgtgtcatctcaca |
446 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||| |||||||||| ||||| | ||||||||||||||||||| |||||| |
|
|
| T |
39744074 |
cgtggtcaacctcctgtcagatatgaaccagaccctcaatccaaagctaaatacctcattagtaattatgtgtcaactcaca |
39744155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University