View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_10 (Length: 418)
Name: NF11382_low_10
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Complemental strand, 3574572 - 3574174
Alignment:
| Q |
15 |
aaatgaacatctctgcatttgagagtttcaaactcggctagtgagaatttcggataaaaatgattcggtttaggtcgctcaataaacaaccacatatcat |
114 |
Q |
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||||||||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
3574572 |
aaatgaacatccctgcatttgaaagtttcaaactcgactagtgagagtttcggataaaaaggattcggtttaggtagcttaataaacaaccacatatcat |
3574473 |
T |
|
| Q |
115 |
atacgcatcacgcatgtgaatcaaaagttccaactccaaaggattgaatgattagaaaaagcatcttcacattcaatttggtccacattatcctcttcaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3574472 |
atacgcatcacgcatgtgaatcaaaagttccaactccaaaggattgaatgattagaaaaggcatcttcacattcaatttggtccacattatcctcttcaa |
3574373 |
T |
|
| Q |
215 |
aaagttgagttgagcattgcatattttgtagcccataaaaatcagagtcattaacaaccccattcatatcctcaaatgtccaatccattgtcctcaaatc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3574372 |
aaagttgagttgagcattgcatattttgtagcccataaaaatcagagtcattaacaaccccattcatatcctcaaatgtccaatccattgtcctcaaatc |
3574273 |
T |
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| Q |
315 |
accaatatcattatctagaggatatgaataagcatttgaattggtatcattttctagcccataa---aattcaaagcaattagcaaccccattcatctc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3574272 |
accaatatcattatctagaggatatgaataagcatttgaattggtatcattttctagcccataaaataattcaaagcaattagcaaccccattcatctc |
3574174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 131 - 367
Target Start/End: Complemental strand, 3551903 - 3551655
Alignment:
| Q |
131 |
tgaatcaaaagttccaactccaaaggattgaatgattagaaaaagcatcttcacattcaatttggtccacattatcctcttcaaaaagttgagttgagca |
230 |
Q |
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||||||||||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| | |
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| T |
3551903 |
tgaatcaaaagttccaattccaaagggttgaatgattagtaaaagtatcttcacattcaatttggtccacattatcctcttcaaagggtggagttgagta |
3551804 |
T |
|
| Q |
231 |
ttgcatattttgtagcccataaaaatcagagtcattaacaaccccatt------------catatcctcaaatgtccaatccattgtcctcaaatcacca |
318 |
Q |
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|||||||||||| |||||||||||||||||| ||||| |||| ||||| |||||| ||||||||||||||||| |||||||||||||| |
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| T |
3551803 |
ttgcatattttgcagcccataaaaatcagagccattagcaactccattcatgtcctcaaacatatcatcaaatgtccaatccatcctcctcaaatcacca |
3551704 |
T |
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| Q |
319 |
atatcattatctagaggatatgaataagcatttgaattggtatcatttt |
367 |
Q |
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| T |
3551703 |
atatcattatctaaaggatatgaataagcatttgaattggtatcatttt |
3551655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 126 - 367
Target Start/End: Complemental strand, 3563067 - 3562814
Alignment:
| Q |
126 |
gcatgtgaatcaaaagttccaactccaaaggattgaatgattagaaaaagcatcttcacattcaatttggtccacattatcctcttcaaaaagttgagtt |
225 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563067 |
gcatgtgaatcaaaaattccaattccaaaggattgaatgattagaaaaggtatcttcacattcaatttggtccacattatcctcttcaaaaagttgagtt |
3562968 |
T |
|
| Q |
226 |
gagcattgcatattttgtagcccataaaaatcagagtcattaacaaccccatt------------catatcctcaaatgtccaatccattgtcctcaaat |
313 |
Q |
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|| ||||||||||||||||||||||||||| |||| |||| |||||| ||| ||||||||||||| |||||||||| | ||||||| |
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| T |
3562967 |
gaatattgcatattttgtagcccataaaaattagagcaattagcaaccctattcatgtcatcaaacatatcctcaaatctccaatccatccttctcaaat |
3562868 |
T |
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| Q |
314 |
caccaatatcattatctagaggatatgaataagcatttgaattggtatcatttt |
367 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| |
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| T |
3562867 |
caccaatatcattatctagaggatatgaataagaattggaattggcatcatttt |
3562814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 3589630 - 3589476
Alignment:
| Q |
126 |
gcatgtgaatcaaaagttccaactccaaaggattgaatgattagaaaaagcatcttcacattcaatttggtccacattatcctcttcaaaaagttgagtt |
225 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
3589630 |
gcatgtgaatcaaaagttccaactccaaaggaatgaatgatcagaaaaagtatcttcacattcaatttggtccacattatcctcttcaacaagttgtgtt |
3589531 |
T |
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| Q |
226 |
gagcattgcatattttgtagcccataaaaatcagagtcattaacaaccccattca |
280 |
Q |
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||| |||||||||||| | ||||||| |||| |||| |||| |||||||||||| |
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| T |
3589530 |
gagtattgcatattttcttgcccatacaaattagagcaattagcaaccccattca |
3589476 |
T |
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