View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11382_low_11 (Length: 417)

Name: NF11382_low_11
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11382_low_11
NF11382_low_11
[»] chr4 (6 HSPs)
chr4 (1-400)||(4328397-4328799)
chr4 (232-277)||(13483083-13483128)
chr4 (230-264)||(3606982-3607016)
chr4 (218-263)||(32662837-32662882)
chr4 (224-260)||(33756049-33756085)
chr4 (218-258)||(40285711-40285751)
[»] scaffold0074 (1 HSPs)
scaffold0074 (218-263)||(45707-45752)
[»] chr8 (3 HSPs)
chr8 (223-259)||(40872963-40872999)
chr8 (219-264)||(26688947-26688992)
chr8 (224-264)||(23874337-23874377)
[»] chr5 (2 HSPs)
chr5 (225-263)||(17877115-17877153)
chr5 (218-263)||(12669555-12669600)
[»] chr3 (4 HSPs)
chr3 (218-264)||(36720463-36720509)
chr3 (232-264)||(2667944-2667976)
chr3 (219-263)||(4222224-4222268)
chr3 (219-262)||(46862599-46862643)
[»] chr1 (3 HSPs)
chr1 (224-262)||(10334044-10334082)
chr1 (216-259)||(21547428-21547469)
chr1 (224-303)||(25494023-25494103)
[»] chr7 (1 HSPs)
chr7 (219-264)||(48983682-48983727)
[»] chr6 (1 HSPs)
chr6 (224-260)||(32201839-32201875)


Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 4328799 - 4328397
Alignment:
Q  1 cccttggaaggataaaatattgtttaatcagtcgaattgagaattagtctcatagtcggtccaaatgaccgaagtagcgg---ggatgccatggtggact 97  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  4328799 cccttggaagaataaaatattgtttaatcagtcgaattgagaattagtctcatagtcggtccaaatgaccgaagtagcggcggggatgccatggtggact 4328700  T
Q  98 cattgtagtgccaaaggctctaattacggtgagtatatgaaaatcctttgtgttagttcttagcatcttgacaacaaagtctaaagtgacgaattttata 197  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328699 cattgtggtgccaaaggctctaattacggtgagtatatgaaaatcctttgtattagttcttagcatcttgacaacaaagtctaaagtgacgaattttata 4328600  T
Q  198 taatttagagataatcgttatttttatttttgttaagaagttaaactagcccacctaaattgacactgggagagtcaaactcaagacctttaggagaagc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4328599 taatttagagataatcgttatttttatttttgttaagaagttaaactagcccacctaaattgatactgggagagtcaaactcaagacctttaggagaagc 4328500  T
Q  298 atactcattatttttaaatactatagagactaaatttgaagatagtgatactttagaaactaaaattgaagagagcgatactatagagactaaattgata 397  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328499 atactcattatttttaaatactatagagactaaagttgaagatagtgatactttagaaactaaaattgaagagagcgatactatagagactaaattgata 4328400  T
Q  398 atg 400  Q
    |||    
T  4328399 atg 4328397  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 13483128 - 13483083
Alignment:
Q  232 aagaagttaaactagcccacctaaattgacactgggagagtcaaac 277  Q
    ||||||||||| ||||||||||||||||||| ||||||| ||||||    
T  13483128 aagaagttaaattagcccacctaaattgacaatgggagaatcaaac 13483083  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Original strand, 3606982 - 3607016
Alignment:
Q  230 ttaagaagttaaactagcccacctaaattgacact 264  Q
    ||||||||||||| |||||||||||||||||||||    
T  3606982 ttaagaagttaaattagcccacctaaattgacact 3607016  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 32662882 - 32662837
Alignment:
Q  218 tttttatttttgttaagaagttaaactagcccacctaaattgacac 263  Q
    ||||| ||||| ||||||||||||| |||||||| |||||||||||    
T  32662882 ttttttttttttttaagaagttaaattagcccacttaaattgacac 32662837  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 33756085 - 33756049
Alignment:
Q  224 tttttgttaagaagttaaactagcccacctaaattga 260  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  33756085 tttttgttaagaagttaaattagtccacctaaattga 33756049  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 40285751 - 40285711
Alignment:
Q  218 tttttatttttgttaagaagttaaactagcccacctaaatt 258  Q
    ||||| ||||| |||||||||||||||| ||||||||||||    
T  40285751 ttttttttttttttaagaagttaaactaacccacctaaatt 40285711  T

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Target: scaffold0074 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 45707 - 45752
Alignment:
Q  218 tttttatttttgttaagaagttaaactagcccacctaaattgacac 263  Q
    ||||| ||||| |||||||||||||||| |||||||||||||||||    
T  45707 ttttttttttttttaagaagttaaactaacccacctaaattgacac 45752  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 40872999 - 40872963
Alignment:
Q  223 atttttgttaagaagttaaactagcccacctaaattg 259  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40872999 attttttttaagaagttaaactagcccacctaaattg 40872963  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 26688992 - 26688947
Alignment:
Q  219 ttttatttttgttaagaagttaaactagcccacctaaattgacact 264  Q
    |||| ||||| |||||||| |||||||||||||| |||||||||||    
T  26688992 tttttttttttttaagaagctaaactagcccacccaaattgacact 26688947  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 23874337 - 23874377
Alignment:
Q  224 tttttgttaagaagttaaactagcccacctaaattgacact 264  Q
    ||||| ||||||||||||| |||||||||||||||| ||||    
T  23874337 ttttttttaagaagttaaattagcccacctaaattgtcact 23874377  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 17877115 - 17877153
Alignment:
Q  225 ttttgttaagaagttaaactagcccacctaaattgacac 263  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  17877115 tttttttaagaagttaaattagcccacctaaattgacac 17877153  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 12669600 - 12669555
Alignment:
Q  218 tttttatttttgttaagaagttaaactagcccacctaaattgacac 263  Q
    ||||| ||||| |||||||  |||||||||||||||||||||||||    
T  12669600 ttttttttttttttaagaaactaaactagcccacctaaattgacac 12669555  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 36720509 - 36720463
Alignment:
Q  218 tttttatttttgttaagaagttaaactagcccacctaaattgacact 264  Q
    ||||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  36720509 ttttttttttttttaagaagctaaaccagcccacctaaattgacact 36720463  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 2667976 - 2667944
Alignment:
Q  232 aagaagttaaactagcccacctaaattgacact 264  Q
    |||||| ||||||||||||||||||||||||||    
T  2667976 aagaagctaaactagcccacctaaattgacact 2667944  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 4222268 - 4222224
Alignment:
Q  219 ttttatttttgttaagaagttaaactagcccacctaaattgacac 263  Q
    |||| ||||| |||||||||||||||| | |||||||||||||||    
T  4222268 tttttttttttttaagaagttaaactaactcacctaaattgacac 4222224  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 46862643 - 46862599
Alignment:
Q  219 ttttatttttgtt-aagaagttaaactagcccacctaaattgaca 262  Q
    |||||||||| || |||||||||||||| ||||||||||||||||    
T  46862643 ttttattttttttgaagaagttaaactaacccacctaaattgaca 46862599  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 10334044 - 10334082
Alignment:
Q  224 tttttgttaagaagttaaactagcccacctaaattgaca 262  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  10334044 ttttttttaagaagttaaattagcccacctaaattgaca 10334082  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 21547428 - 21547469
Alignment:
Q  216 tatttttatttttgttaagaagttaaactagcccacctaaattg 259  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||    
T  21547428 tatttttttttttg--aagaagttaaactagcccacctaaattg 21547469  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 25494023 - 25494103
Alignment:
Q  224 tttttgttaagaagttaaactagcccacctaaattgacact-gggagagtcaaactcaagacctttaggagaagcatactc 303  Q
    ||||| ||||||||||||| ||||||| |||||||| |||| ||||||  | ||||| ||||||  |||||||||| ||||    
T  25494023 ttttttttaagaagttaaattagcccatctaaattgtcactagggagaagcgaactcgagacctcgaggagaagcaaactc 25494103  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 48983682 - 48983727
Alignment:
Q  219 ttttatttttgttaagaagttaaactagcccacctaaattgacact 264  Q
    |||| ||||| ||||||||||||| ||||||||| |||||||||||    
T  48983682 tttttttttttttaagaagttaaattagcccacccaaattgacact 48983727  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 32201839 - 32201875
Alignment:
Q  224 tttttgttaagaagttaaactagcccacctaaattga 260  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  32201839 ttttttttaagaagttaaactaacccacctaaattga 32201875  T

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