View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11382_low_12 (Length: 417)
Name: NF11382_low_12
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_12 |
 | |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 415
Target Start/End: Complemental strand, 37744736 - 37744338
Alignment:
| Q |
20 |
caacttccaactctgtaacaagattgcttctctccctcaatacaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctctaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37744736 |
caacttccaactctgtaacaagattgcttctctccctcaatacaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctctaa |
37744637 |
T |
|
| Q |
120 |
tatcctacgttcttttgttcgtgtgaacgaggcgaacacgactctcaataaataaccgtcattacgacctgagaaccgtctttgaagaagattatggaag |
219 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
37744636 |
tatcctacgttcttttgttcgtgtgaacgaagcgaacgcgactctcaataaataaccgccgttacgacctgagaaccgtctttgaagaagattatggaag |
37744537 |
T |
|
| Q |
220 |
ttttggcctgagacattataaacaggtgaattaaccacatcttcaattacttggtttctttagttctacagnnnnnnnnnnnnngaaaaactcaattacc |
319 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
37744536 |
ttttggtctgagacattataaacaggtgaattaaccacatcttcaattacttggtttctttagttctgcagttttttattttttgaaaaactcaattacg |
37744437 |
T |
|
| Q |
320 |
cattttgcagtctacaaagatttttgtttggcaa---tgttcatatttaaacatgtttgtggatttatcaagttcaaaaaataaattctatttgcatat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
37744436 |
cattttgcagtctacaaagatttttgtttggcaatgttgttcatatttaaacatgtttgtggatttatcaagttcaaaaaataaattatatttgcatat |
37744338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 48776702 - 48776299
Alignment:
| Q |
17 |
cagcaacttccaactctgtaacaagattgcttctctccctcaatacaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48776702 |
cagcaacttccaactctgtaacaagattgcttctctccctcaatgcaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctc |
48776603 |
T |
|
| Q |
117 |
taatatcctacgttcttttgttcgtgtgaacgaggcgaacacgactctcaataaataaccgtcattacgacctgagaaccgtctttgaagaagattatgg |
216 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
48776602 |
taatatcctacattcttttgttcgtgtaaacgaggcgaacgcaactctcaataaataaccgccgttacgacctgagaaccgtctttgaagaagattatgg |
48776503 |
T |
|
| Q |
217 |
aagttttggcctgagacattataaacaggtgaattaaccacatcttcaattacttggtttctttagttctacagnnnnnnnnnnnnngaaaaactcaatt |
316 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
48776502 |
aagttttggtatgagacattataaataggtgaattaaccacatcttcaattacttggtttctttagttctacagttttttattttttgaaaaactcaatt |
48776403 |
T |
|
| Q |
317 |
acccattttgcagtctacaaagatttttgtttggcaa---tgttcatatttaaacatgtttgtggatttatcaagttcaaaaaataaattctatttgcat |
413 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
48776402 |
acgcattttgcagtcttcaaagatttttgtttggcaatgttgttcatatttaaacatgtttgtggatttattaagttcaaaaaataaattctatttgcat |
48776303 |
T |
|
| Q |
414 |
attc |
417 |
Q |
| |
|
|||| |
|
|
| T |
48776302 |
attc |
48776299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 48771688 - 48772092
Alignment:
| Q |
17 |
cagcaacttccaactctgtaacaagattgcttctctccctcaatacaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctc |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48771688 |
cagcaacttccaactctgttacaagattgcttctctccctcaatacaacaaaacccaatcagttctttctcttttttcaattgaaggtatcaaatatctc |
48771787 |
T |
|
| Q |
117 |
taatatcctacgttcttttgttcgtgtgaacgaggcgaacacgactctcaataaataaccgtcattacgacctgagaaccgtctttgaagaagattatgg |
216 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| |||| | |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| |
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|
| T |
48771788 |
taatattctacattcttttgttcgtgtgaacgaggtgaacgcaactctcaataaataaccgccgttacgacttgagaaccgtctttgaagaagattatgg |
48771887 |
T |
|
| Q |
217 |
aagttttggcctgagacattataaacaggtgaattaaccacatcttcaattacttggtttctttagttctacagnnnnnnnnnnnnngaaaaactcaatt |
316 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
48771888 |
aagttttggtctgagacattataaacagatgaattaaccacatcttcaattacttggtttctttagttctacagttttttattttttgaaaaactcaatt |
48771987 |
T |
|
| Q |
317 |
acccattttgcagtctacaaagatttttgtttggcaa---tgttcatatttaaacatgtttgtggatttatcaagttc-aaaaaataaattctatttgca |
412 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
48771988 |
acgcattttgcagtctccaaagaattttgtttggcaatgttgttcatttttaaacatgtttgtggatttattaagttcaaaaaaataaattctatttgca |
48772087 |
T |
|
| Q |
413 |
tattc |
417 |
Q |
| |
|
||||| |
|
|
| T |
48772088 |
tattc |
48772092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 34692638 - 34693041
Alignment:
| Q |
17 |
cagcaacttccaactctgtaacaagattgcttctctccctcaatacaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34692638 |
cagcaacttccaactctgtaacaagattgcttctctccctcaatccaacaaaactcaatcaattctttctcttttttcaattgaaggtatcaaatatctc |
34692737 |
T |
|
| Q |
117 |
taatatcctacgttcttttgttcgtgtgaacgaggcgaacacgactctcaataaataaccgtcattacgacctgagaaccgtctttgaagaagattatgg |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
34692738 |
taatatcctacattcttttgttcgtgtgaacgaggcgaacgcgactctcaataaaaaaccaccgttacgacctgagaactgtctttgaaaaagattatgg |
34692837 |
T |
|
| Q |
217 |
aagttttggcctgagacattataaacaggtgaattaaccacatcttcaattacttggtttctttagttctacagnnnnnnnnnnnnngaaaaactcaatt |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
34692838 |
aagttttgatctgagacattataaacaggtgaattaaccacatcttcaattacttggtttctttagttctacagttttttattttttgagaaactcaatt |
34692937 |
T |
|
| Q |
317 |
acccattttgcagtctacaaagatttttgtttggcaa---tgttcatatttaaacatgtttgtggatttatcaagttcaaaaaataaattctatttgcat |
413 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
34692938 |
acgcattttgcagtctccaaagatttttgtttggcaatgttgttcatatttaaacatgtttgtggatttattaagttcaaaaaataaattctatttgcat |
34693037 |
T |
|
| Q |
414 |
attc |
417 |
Q |
| |
|
|||| |
|
|
| T |
34693038 |
attc |
34693041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 34715050 - 34715453
Alignment:
| Q |
17 |
cagcaacttccaactctgtaacaagattgcttctctccctcaatacaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34715050 |
cagcaacttccaactctgtaacaagattgcttctctccctcaatccaacaaaactcaatcaattctttctcttttttcaattgaaggtatcaaatatctc |
34715149 |
T |
|
| Q |
117 |
taatatcctacgttcttttgttcgtgtgaacgaggcgaacacgactctcaataaataaccgtcattacgacctgagaaccgtctttgaagaagattatgg |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
34715150 |
taatatcctacattcttttgttcgtgtgaacgaggcgaacgcgactctcaataaaaaaccaccgttacgacctgagaactgtctttgaaaaagattatgg |
34715249 |
T |
|
| Q |
217 |
aagttttggcctgagacattataaacaggtgaattaaccacatcttcaattacttggtttctttagttctacagnnnnnnnnnnnnngaaaaactcaatt |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
34715250 |
aagttttgatctgagacattataaacaggtgaattaaccacatcttcaattacttggtttctttagttctacagttttttattttttgagaaactcaatt |
34715349 |
T |
|
| Q |
317 |
acccattttgcagtctacaaagatttttgtttggcaa---tgttcatatttaaacatgtttgtggatttatcaagttcaaaaaataaattctatttgcat |
413 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34715350 |
acgcattttgcagtctccaaagatttttgtttggcaatgttgttcatatttaaacatgtttgtggatttattaagttcaaaaaataaattctatttgcat |
34715449 |
T |
|
| Q |
414 |
attc |
417 |
Q |
| |
|
|||| |
|
|
| T |
34715450 |
attc |
34715453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 2415047 - 2415277
Alignment:
| Q |
19 |
gcaacttccaactctgtaacaagattgcttctctccctcaatacaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctcta |
118 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
2415047 |
gcaacttccaactctgcaactctattgcttctctccctcaatacaacaaaaatcaatcgattctttctcttttttcaatagaaggtatcaaatatttcta |
2415146 |
T |
|
| Q |
119 |
atatcctacgttcttttgttcgtgtgaacgaggcgaacacgactctcaataaataaccgtcattacgacctgagaaccgtctttgaagaagattatggaa |
218 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
2415147 |
atatcctactttcttttgttcgtgcgaacgaggtgaacacgactctcaataaataaccttcgttacgacctgagaaccatcttggaagaagattatgcaa |
2415246 |
T |
|
| Q |
219 |
gttttggcctgagacattataaacaggtgaa |
249 |
Q |
| |
|
|| |||| |||||||||||| |||||||||| |
|
|
| T |
2415247 |
gtgttggtctgagacattatcaacaggtgaa |
2415277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 16079599 - 16079989
Alignment:
| Q |
17 |
cagcaacttccaactctgtaacaagattgcttctctccctcaatacaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16079599 |
cagcaacttccaactctgtaacaagattgcttctctccctcaatacaacaaaactcaatcagttctttctcttttttcaattgaaggtatcaaatatctc |
16079698 |
T |
|
| Q |
117 |
taatatcctacgttcttttgttcgtgtgaacgaggcgaacacgactctcaataaataaccgtcattacgacctgagaaccgtctttgaagaagattatgg |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16079699 |
taatatcctacattcttttgttcgtgtgaacgatgcgaacacaactctcaataaataaccgccgttacgacctgagaaccgtctttgaagaagattatgg |
16079798 |
T |
|
| Q |
217 |
aagttttggcctgagacattataaacaggtgaattaaccacatcttcaattacttggtttctttagttctacagnnnnnnnnnnnnngaaaaactcaatt |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16079799 |
aagtt-------------ttataaacaggtgaattaaccacatcttcagttacttggtttctttagttctacaattttttattttttgaaaaactcaatt |
16079885 |
T |
|
| Q |
317 |
acccattttgcagtctacaaagatttttgtttggcaa---tgttcatatttaaacatgtttgtggatttatcaagttcaaaaaataaattctatttgcat |
413 |
Q |
| |
|
|| ||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16079886 |
acgcattttgcattctccaaagatttttgtttggcaatgttgttcatatttaaacatgtttgtggatttattaagttcaaaaaataaattctatttgcat |
16079985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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