View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_13 (Length: 412)
Name: NF11382_low_13
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 40986741 - 40986363
Alignment:
| Q |
19 |
aaatactgattgatttcaaagatgctaagattctaacagtttgcagctatctactccaggtacacttttattcatttagttgacatccaatttgtgatta |
118 |
Q |
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| T |
40986741 |
aaatactgattgatttcaaagatgctaagattctaacagtttgcagctatctactccaggtacaattttattcatttagttgacatccaatttgtgatta |
40986642 |
T |
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| Q |
119 |
tagattaattttacattgatatttgttattatgtttatttctaaacattttgtcttttgttatacacaaaaaggttgctccatccgcacgtgacctagta |
218 |
Q |
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| T |
40986641 |
tagattaattttacattgatatttgttattgtgtttatttctaaacattttgtcttttgttatgcacaaaaaggttgctccatccgcaggtgacctagta |
40986542 |
T |
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| Q |
219 |
acagtgagtacaaaaacttatttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagtt |
318 |
Q |
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| T |
40986541 |
acagtgagtgcaaaaacttatttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagtt |
40986442 |
T |
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| Q |
319 |
gcccgttgctagaaaaactcacattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacatttcat |
397 |
Q |
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| T |
40986441 |
gcccgttgctagaaaaactcacattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacatttcat |
40986363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 239 - 397
Target Start/End: Complemental strand, 40994285 - 40994128
Alignment:
| Q |
239 |
tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc |
338 |
Q |
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| T |
40994285 |
tttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattgcttgaaaaactt |
40994186 |
T |
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| Q |
339 |
acattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacatttcat |
397 |
Q |
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|||||||||||||||| ||||||||||||| |||||||| ||||| | ||||||||||| |
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| T |
40994185 |
acattggacataagtccacaagttatatttgaggtgagtaaaata-ctttacatttcat |
40994128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 40994544 - 40994498
Alignment:
| Q |
42 |
gctaagattctaacagtttgcagctatctactccaggtacactttta |
88 |
Q |
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| T |
40994544 |
gctaagattctaacagtttgcagttatctactccaggtactctttta |
40994498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 40989799 - 40989752
Alignment:
| Q |
336 |
ctcacattggacataagtcaacaagttatatttaaggtgagtcaaata |
383 |
Q |
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| T |
40989799 |
ctcacatttcacataagtccacaagttatatttgaggtgagtcaaata |
40989752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 239 - 384
Target Start/End: Original strand, 21180654 - 21180799
Alignment:
| Q |
239 |
tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc |
338 |
Q |
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||||||||||| |||||||| |||||| || |||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||| |
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| T |
21180654 |
tttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgcccattgcttgaaaaactc |
21180753 |
T |
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| Q |
339 |
acattggacataagtcaacaagttatatttaaggtgagtcaaatac |
384 |
Q |
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| T |
21180754 |
atattggacataagtccacaacttatatttgaggtcagtcaaatac |
21180799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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