View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11382_low_14 (Length: 398)

Name: NF11382_low_14
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11382_low_14
NF11382_low_14
[»] chr4 (9 HSPs)
chr4 (18-175)||(14246411-14246568)
chr4 (18-174)||(5914942-5915098)
chr4 (275-392)||(14246206-14246311)
chr4 (50-176)||(5813465-5813587)
chr4 (22-122)||(22721927-22722027)
chr4 (42-157)||(17612571-17612686)
chr4 (18-78)||(37795146-37795206)
chr4 (18-96)||(47073069-47073146)
chr4 (38-79)||(28292387-28292428)
[»] chr2 (13 HSPs)
chr2 (18-176)||(6357039-6357197)
chr2 (19-176)||(59391-59548)
chr2 (18-174)||(32652619-32652775)
chr2 (34-174)||(7565509-7565651)
chr2 (275-392)||(6356835-6356940)
chr2 (18-176)||(43445225-43445391)
chr2 (38-172)||(19073574-19073708)
chr2 (33-150)||(18514419-18514536)
chr2 (42-157)||(41713398-41713513)
chr2 (40-157)||(41644110-41644227)
chr2 (38-172)||(6177996-6178130)
chr2 (127-174)||(40912471-40912518)
chr2 (38-172)||(19093676-19093810)
[»] chr3 (11 HSPs)
chr3 (18-173)||(29923037-29923192)
chr3 (18-173)||(29972190-29972345)
chr3 (18-176)||(5125438-5125595)
chr3 (18-176)||(11019696-11019853)
chr3 (18-166)||(42663994-42664142)
chr3 (18-174)||(48154359-48154515)
chr3 (18-176)||(54607870-54608021)
chr3 (18-176)||(36689670-36689824)
chr3 (116-176)||(12121223-12121283)
chr3 (38-172)||(32180443-32180577)
chr3 (38-138)||(31706512-31706612)
[»] chr5 (12 HSPs)
chr5 (18-176)||(26412048-26412206)
chr5 (18-174)||(8762868-8763024)
chr5 (18-174)||(13888327-13888483)
chr5 (19-150)||(3014685-3014815)
chr5 (18-175)||(12080406-12080563)
chr5 (35-172)||(25654571-25654707)
chr5 (42-172)||(29766498-29766628)
chr5 (33-176)||(10053816-10053953)
chr5 (42-172)||(22616715-22616842)
chr5 (113-172)||(27579248-27579307)
chr5 (38-79)||(21321065-21321106)
chr5 (38-175)||(33848039-33848176)
[»] chr6 (7 HSPs)
chr6 (18-174)||(4487728-4487884)
chr6 (18-174)||(25441707-25441863)
chr6 (18-174)||(18306553-18306709)
chr6 (33-172)||(6613680-6613819)
chr6 (40-169)||(11083852-11083978)
chr6 (118-176)||(26819686-26819745)
chr6 (38-150)||(4104260-4104372)
[»] chr7 (6 HSPs)
chr7 (18-174)||(25470641-25470797)
chr7 (18-133)||(8759497-8759612)
chr7 (42-172)||(49002446-49002576)
chr7 (113-172)||(10675026-10675085)
chr7 (85-155)||(8133298-8133368)
chr7 (19-172)||(23402045-23402198)
[»] scaffold0312 (1 HSPs)
scaffold0312 (18-176)||(8213-8371)
[»] chr8 (4 HSPs)
chr8 (18-176)||(1872585-1872742)
chr8 (38-172)||(34685997-34686131)
chr8 (38-150)||(3038649-3038761)
chr8 (38-157)||(23176479-23176598)
[»] chr1 (11 HSPs)
chr1 (18-176)||(422201-422359)
chr1 (18-176)||(28012921-28013079)
chr1 (18-81)||(7843098-7843161)
chr1 (19-85)||(26970830-26970896)
chr1 (32-157)||(15964337-15964462)
chr1 (22-150)||(5500598-5500725)
chr1 (41-173)||(16135544-16135676)
chr1 (22-172)||(47554977-47555127)
chr1 (22-79)||(4146696-4146753)
chr1 (24-65)||(51129223-51129264)
chr1 (18-66)||(42663235-42663283)
[»] scaffold0262 (1 HSPs)
scaffold0262 (116-176)||(11443-11503)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 14246568 - 14246411
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14246568 ctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggac 14246469  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatta 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14246468 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatta 14246411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 5914942 - 5915098
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||| ||| || |||||||||||||| ||||||||||||| |||| ||||||||| | || || ||  ||||||||||  ||||||||||||||||    
T  5914942 ctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcaaagttgttcataccatgtcagctagtgtctttgtgatggac 5915041  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    |||| ||| |||||||||||||||||||||||| ||||||   | ||||||||||||    
T  5915042 cactgtaacactaaattttactttattacaaattagtcctcataaaaaatattaatt 5915098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 275 - 392
Target Start/End: Complemental strand, 14246311 - 14246206
Alignment:
Q  275 gttcatcatcatcccaaaaacgaaaacatgatcatcaaaaatctttccaaacccaatacttctctcatgtccgattcttgagttcttcatctcaaattcg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||            ||  | |||||||||||||||||||||||||    
T  14246311 gttcatcatcatcccaaaaacgaaaacatgatcatcaaaaatcgttccaaacccaat------------tcaaaatcttgagttcttcatctcaaattcg 14246224  T
Q  375 aaatccaattcttctctc 392  Q
    ||||||||||||||||||    
T  14246223 aaatccaattcttctctc 14246206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 5813587 - 5813465
Alignment:
Q  50 aaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttactttattacaaa 149  Q
    |||||||||||| ||||||||||||| |   |||| ||| |||||||| |  ||||||| |||||||||||| |||||||||| |||||||||||| |||    
T  5813587 aaaagtcattttgtttagccaatagcgt---tcttgatgccatgtcagttagtgtctttatgatggaccactgtaagactaaa-tttactttattaaaaa 5813492  T
Q  150 taagtccttgaacaaaatattaattac 176  Q
    |||||| ||| | ||||||||||||||    
T  5813491 taagtcattgtataaaatattaattac 5813465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 22721927 - 22722027
Alignment:
Q  22 ggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccact 121  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||| | |||| | || ||| ||||||||||  ||||||  ||||||||||||    
T  22721927 ggtgtagttaagaaaatgacttttttggaaaagtcattttgtttagccaatggaataaatgttgatgccatgtcagctagtgtcttgttgatggaccact 22722026  T
Q  122 a 122  Q
    |    
T  22722027 a 22722027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 17612686 - 17612571
Alignment:
Q  42 ttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttacttt 141  Q
    |||||||||||||| |||||||||||||||||| |||| | |  ||||||||||||||  |||| |  || ||||||||| ||| |||||||||||| ||    
T  17612686 ttttttgaaaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagtgtcctgttggtggaccactctaaaactaaattttacctt 17612587  T
Q  142 attacaaataagtcct 157  Q
    ||||||||| ||||||    
T  17612586 attacaaattagtcct 17612571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 37795206 - 37795146
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcata 78  Q
    ||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||||    
T  37795206 ctatggtgtagttaagaaaatgactcttttgaaaaagtcattttgttcagccaatatcata 37795146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 47073069 - 47073146
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtca 96  Q
    |||||||||||| |  ||| ||||| |||||||||||| |||||||||  ||||||||||||  ||| |||||||||||    
T  47073069 ctatggtgtagtcagtaaattgactattttgaaaaagttattttattttaccaatagcataaccctt-atgtcatgtca 47073146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 28292387 - 28292428
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataa 79  Q
    |||||||||| ||||||| |||||||||||||||||| ||||    
T  28292387 tgacttttttaaaaaagttattttatttagccaatagtataa 28292428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 6357197 - 6357039
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6357197 ctatggtgtagtcaagaaaatgacttttttgaaaaagtcatttaatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggac 6357098  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6357097 cactataagactaaattttactttattataaataagtccttgaacaaaatattaattac 6357039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 59548 - 59391
Alignment:
Q  19 tatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggacc 118  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| || ||| |||||||||| ||| |||  |||||||||    
T  59548 tatggtgtagttaagcaaatgacttttttgaaaaagttattttatttagccaattgcataattattgatgccatgtcagctaatggcttcttgatggacc 59449  T
Q  119 actataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    |   |||||||||||||||  |||||| |||| |||| | | ||||||||||||||||    
T  59448 aacgtaagactaaattttatcttattataaatcagtcatcgtacaaaatattaattac 59391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 32652775 - 32652619
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||| ||| || ||||| |||||||| ||||||||||||| |||| ||||||||||| || || ||| ||||||||||  |||||||||||| |||    
T  32652775 ctatggtgcagtcaaaaaaataacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatagac 32652676  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    |||||| | | |||||||||||||||||||||| ||||||   ||||||||||||||    
T  32652675 cactatgacattaaattttactttattacaaatcagtcctcatacaaaatattaatt 32652619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 7565651 - 7565509
Alignment:
Q  34 aaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaat 133  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||| || || ||| ||||||||||  |||||||||||||||||||| ||| |||||||    
T  7565651 aaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaat 7565552  T
Q  134 ttta--ctttattacaaataagtccttgaacaaaatattaatt 174  Q
    ||||   |||||||||||| ||||||   ||||||||||||||    
T  7565551 tttattttttattacaaatcagtcctcatacaaaatattaatt 7565509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 275 - 392
Target Start/End: Complemental strand, 6356940 - 6356835
Alignment:
Q  275 gttcatcatcatcccaaaaacgaaaacatgatcatcaaaaatctttccaaacccaatacttctctcatgtccgattcttgagttcttcatctcaaattcg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||            ||  | |||||||||||||||||||||||||    
T  6356940 gttcatcatcatcccaaaaacgaaaacatgatcatcaaaaatcgttccaaacccaat------------tcaaaatcttgagttcttcatctcaaattcg 6356853  T
Q  375 aaatccaattcttctctc 392  Q
    ||||||||||||||||||    
T  6356852 aaatccaattcttctctc 6356835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 43445225 - 43445391
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaa-gtcattttatttagccaatagcataattcttaa-------tgtcatgtcagctgatgtctttg 109  Q
    |||||||||||| |||||||| | |||||| ||||| ||||||||||||||||||||| ||| || ||||       || |||||||  | |||| |||     
T  43445225 ctatggtgtagtcaagaaaataatttttttaaaaaaagtcattttatttagccaatagaatagttgttaacttgttatgccatgtcaattaatgtttttc 43445324  T
Q  110 tgatggaccactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
     ||||||||||  |||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  43445325 ggatggaccaccgtaagactaaattttactttattacaaattagtccttatacaaaatattaattac 43445391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 19073708 - 19073574
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatttta 137  Q
    ||||||||||| |||||| ||||||||||| |||||| |||||| || ||||||||||||    |||| |  || || |||||| ||| |||||||||||    
T  19073708 tgacttttttgtaaaagttattttatttagtcaatagtataattgttgatgtcatgtcagtcagtgtcctgctggtgaaccactttaaaactaaatttta 19073609  T
Q  138 ctttattacaaataagtccttgaacaaaatattaa 172  Q
    | ||||||||||| |||||| | | ||||||||||    
T  19073608 ccttattacaaatcagtcctcgtataaaatattaa 19073574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 18514419 - 18514536
Alignment:
Q  33 gaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaa 132  Q
    |||| ||| |||||||||||||| ||||| |||||| ||||| |||| | |||||||||||||| ||  |||| |  || ||||||||||||||||| ||    
T  18514419 gaaactgaattttttgaaaaagttattttgtttagctaatagtataactgttaatgtcatgtcaactagtgtcgtgctggtggaccactataagactgaa 18514518  T
Q  133 ttttactttattacaaat 150  Q
     |||||||||||| ||||    
T  18514519 ctttactttattataaat 18514536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 41713513 - 41713398
Alignment:
Q  42 ttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttacttt 141  Q
    |||||||||||||| ||||| ||||| |||||| |||||| | ||| |||||||||||  |||| |  || ||||||||| ||| ||||| |||||  ||    
T  41713513 ttttttgaaaaagttattttgtttagtcaatagtataattatcaatatcatgtcagctagtgtcatgttggtggaccactctaaaactaagttttatctt 41713414  T
Q  142 attacaaataagtcct 157  Q
    ||||||||| ||||||    
T  41713413 attacaaatcagtcct 41713398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 41644227 - 41644110
Alignment:
Q  40 acttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttact 139  Q
    ||||||||||||||   ||||| |||||||||||  |||||| || ||||||||||||||  |||| |  || ||||||||| ||| |||||| | |||     
T  41644227 acttttttgaaaaatatattttgtttagccaataatataattgttgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaactctacc 41644128  T
Q  140 ttattacaaataagtcct 157  Q
    ||||||||||| ||||||    
T  41644127 ttattacaaatcagtcct 41644110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 6178130 - 6177996
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatttta 137  Q
    ||||||||||  |||||| ||||| |||||||||||| |||| |    ||||||||||||||  |||| |  || ||||||||| ||  |||||| ||||    
T  6178130 tgacttttttagaaaagttattttgtttagccaatagtataactgccgatgtcatgtcagctagtgtcatgttggtggaccactctagaactaaacttta 6178031  T
Q  138 ctttattacaaataagtccttgaacaaaatattaa 172  Q
    | ||||||||||| |||| | | ||||||||||||    
T  6178030 ccttattacaaatcagtcatcgtacaaaatattaa 6177996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 40912471 - 40912518
Alignment:
Q  127 actaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    |||||||||||||||||||||||| ||||||   ||||||||||||||    
T  40912471 actaaattttactttattacaaatcagtcctcatacaaaatattaatt 40912518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 19093810 - 19093676
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatttta 137  Q
    |||||||||| ||||||| | ||| ||||  |||||| |||||| || |||| || ||| ||  ||||||  ||  |||||||| ||| |||||| ||||    
T  19093810 tgacttttttaaaaaagttaatttgtttaatcaatagtataattgttgatgttatctcaactagtgtcttgttggaggaccactctaaaactaaacttta 19093711  T
Q  138 ctttattacaaataagtccttgaacaaaatattaa 172  Q
    | ||||||||||| ||||||   ||||||||||||    
T  19093710 ccttattacaaatcagtcctcttacaaaatattaa 19093676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 29923037 - 29923192
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||| ||| ||||| ||| |||||||||||| |||||||||||||||    
T  29923037 ctatggtgtagtcaagaaaatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggac 29923136  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaat 173  Q
    |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||    
T  29923137 cactataaaactaaattttactttattacaaataagttcttgtacaaaatattaat 29923192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 29972190 - 29972345
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||| ||| ||||| ||| |||||||||||| |||||||||||||||    
T  29972190 ctatggtgtagtcaagaaaatgactttttttaaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggac 29972289  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaat 173  Q
    |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||    
T  29972290 cactataaaactaaattttactttattacaaataagttcttgtacaaaatattaat 29972345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 5125595 - 5125438
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| ||||||| |||||| ||||||||||  ||||||||||||||||    
T  5125595 ctatggtgtagtcaagaaaatgacttttttgaaaaagttattttatttaaccaataacataattgttaatgccatgtcagctagtgtctttgtgatggac 5125496  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    |||| |||||||||| | ||  ||||||||||| ||||||   ||||||||||||||||    
T  5125495 cactgtaagactaaa-tatatcttattacaaatcagtcctcttacaaaatattaattac 5125438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 11019853 - 11019696
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||| || |||| |||| ||||  ||||||||||||||||    
T  11019853 ctatggtgtagtcaaaaaaatgatttttttgaaaaagtcattttatttagccaatagcatgattgtt-atgtaatgttagctagtgtctttgtgatggac 11019755  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    |||| |||||||||||||||  ||||||||||| |||||| | | ||||||||||||||    
T  11019754 cactctaagactaaattttatcttattacaaatcagtcctcgtataaaatattaattac 11019696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 42663994 - 42664142
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||| ||| || || ||||||||||||||  ||||||||||||  ||    
T  42663994 ctatggtgtagtcaagaaaatgactttttagaaaaagttattttatttagtcaatagtatagttgttgatgtcatgtcagctagtgtctttgtgataaac 42664093  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaa 166  Q
    |||| |||||||||||||||||||||||||||| |||||| | ||||||    
T  42664094 cactgtaagactaaattttactttattacaaatcagtcctcgtacaaaa 42664142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 48154359 - 48154515
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||| |||||| |||||||||||||| ||||| ||||||| |||| ||||||||||| || || ||| ||||||||||  ||||||||||||||||    
T  48154359 ctatggtgcagttaaaaaaatgacttttttaaaaaaatcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggac 48154458  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    |||| ||| |||||||||||||||||||||||| ||||||   |||||| |||||||    
T  48154459 cactgtaacactaaattttactttattacaaatcagtcctcatacaaaacattaatt 48154515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 54608021 - 54607870
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |||||       ||||||||||||||||    
T  54608021 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgccatgt------gtgtctttgtgatggac 54607928  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    |||| |||||||||| | ||  ||||||||||| |||| |   ||||||||||||||||    
T  54607927 cactgtaagactaaa-tatatcttattacaaatcagtcttcttacaaaatattaattac 54607870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 36689824 - 36689670
Alignment:
Q  18 ctatggtgtagttaagaaaatgactttttt-gaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatgga 116  Q
    ||||||||| || ||||||||||||||||| ||||||||||||| |     |||||| |||| || || ||||||||||||||  ||||||  |||||||    
T  36689824 ctatggtgttgtcaagaaaatgactttttttgaaaaagtcatttaa-----ccaataacatagttgttgatgtcatgtcagctagtgtcttgttgatgga 36689730  T
Q  117 ccactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    ||||  ||| |||||| ||||||||||||||||||||||||   ||||||||||||||||    
T  36689729 ccaccgtaaaactaaactttactttattacaaataagtcctcatacaaaatattaattac 36689670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 12121223 - 12121283
Alignment:
Q  116 accactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||  ||||||||||||||||    
T  12121223 accactataagactaaactttaccttattacaaataactccttatacaaaatattaattac 12121283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 32180443 - 32180577
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatttta 137  Q
    |||||| |||| |||||| ||||| |||||||||||| |||| |  | |||||||||| |||  |||| |  || ||||||||| ||| |||||| ||||    
T  32180443 tgacttctttggaaaagttattttgtttagccaatagtataactgctgatgtcatgtcggctagtgtcctgctggtggaccactctaaaactaaacttta 32180542  T
Q  138 ctttattacaaataagtccttgaacaaaatattaa 172  Q
    | ||||||||||| ||||||   ||||||||||||    
T  32180543 ccttattacaaatcagtcctcatacaaaatattaa 32180577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 31706512 - 31706612
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatttta 137  Q
    |||||||||||||||||| ||||| ||||  |||||| |||||| || ||||||||| | ||  |||| |  |||||||||||| |||||||||| ||||    
T  31706512 tgacttttttgaaaaagttattttgtttaatcaatagtataatttttgatgtcatgttaactagtgtcctgttgatggaccactctaagactaaacttta 31706611  T
Q  138 c 138  Q
    |    
T  31706612 c 31706612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 26412206 - 26412048
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| || ||||||||||||||    
T  26412206 ctatggtgtagtcaagaaaatgacttatttgaaaaagtcattttatttagccaatagcatgattgttgatgtcatgtcagctaatatctttgtgatggac 26412107  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    || | |||||||||||| ||  ||||| ||||| |||||| | | ||||||||||||||    
T  26412106 cattgtaagactaaattatatcttattgcaaatcagtcctcgtataaaatattaattac 26412048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 8762868 - 8763024
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||| ||| || |||||||||||||| ||||||||||||| |||| ||||||||||| || || ||| |||||||||   ||||||||||||||||    
T  8762868 ctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggac 8762967  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    |||  ||| |||||||||||||||||||||||| |||||| | ||||||||||||||    
T  8762968 caccgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaatt 8763024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 13888483 - 13888327
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| || |||||||||||||| |||||||||||||||||| ||||| ||||| || || ||| ||||||||||  ||||||||||||||||    
T  13888483 ctatggtgtagtaaaaaaaatgacttttttaaaaaagtcattttatttaaccaattgcatagttgtttatgccatgtcagctagtgtctttgtgatggac 13888384  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    | || ||| ||||||||||||||||||| |||| ||||||   ||||||||||||||    
T  13888383 ccctgtaacactaaattttactttattataaatcagtcctcatacaaaatattaatt 13888327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 3014815 - 3014685
Alignment:
Q  19 tatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggacc 118  Q
    ||||||| ||| || ||||||| |||||| ||||||||||||| |||| ||||||||||| || || ||| |||||||| |  |||||||||||||||||    
T  3014815 tatggtgcagtcaacaaaatgattttttt-aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagttagtgtctttgtgatggacc 3014717  T
Q  119 actataagactaaattttactttattacaaat 150  Q
    ||| ||| ||||||||||||||||||||||||    
T  3014716 actgtaacactaaattttactttattacaaat 3014685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 12080406 - 12080563
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| | |||| |||||||||||||||||| ||||| ||||| | ||| ||||||| || ||||||||||||||  |||| |  || |||||    
T  12080406 ctatggtgtagtcaggaaattgacttttttgaaaaagttattttgtttagtcgataacataattgttgatgtcatgtcagctagtgtcctgctggtggac 12080505  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatta 175  Q
    |||| |||||||||| ||||| ||||||||||| ||||||   |||||||||| ||||    
T  12080506 cactttaagactaaactttaccttattacaaatcagtcctcatacaaaatatttatta 12080563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 172
Target Start/End: Complemental strand, 25654707 - 25654571
Alignment:
Q  35 aaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatt 134  Q
    |||||||||||||  |||||| ||||| |||| ||||||| |||||| || |||| |||||| ||  ||| ||  |||||||||||| ||| |||||| |    
T  25654707 aaatgacttttttagaaaagttattttgtttaaccaatagtataattgttgatgt-atgtcaactagtgtattattgatggaccactctaaaactaaact 25654609  T
Q  135 ttactttattacaaataagtccttgaacaaaatattaa 172  Q
    |||| ||||||||||| |||| ||| ||||| ||||||    
T  25654608 ttaccttattacaaatcagtctttgtacaaactattaa 25654571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 29766498 - 29766628
Alignment:
Q  42 ttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttacttt 141  Q
    ||||||| | |||| |||||||||| ||||||| |||| | |||||| ||||||| ||  |||  |  |||||||||||| |||||||||| ||||| ||    
T  29766498 ttttttggataagttattttatttatccaatagtataactgttaatgccatgtcaactagtgttctactgatggaccactctaagactaaactttacctt 29766597  T
Q  142 attacaaataagtccttgaacaaaatattaa 172  Q
    ||||||||| ||| ||   ||||||||||||    
T  29766598 attacaaattagttctcatacaaaatattaa 29766628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 10053953 - 10053816
Alignment:
Q  33 gaaaatgacttttttgaaaaagtcat-tttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaa 131  Q
    |||| |||||||||||||||||| || ||| |||| ||||||| |||| | || ||||||||||||||  |||         |||||||| || ||||||    
T  10053953 gaaattgacttttttgaaaaagttatgtttgtttacccaatagtataactgttgatgtcatgtcagctagtgt---------ggaccactctacgactaa 10053863  T
Q  132 attttactttattac--aaataagtccttgaacaaaatattaattac 176  Q
    |||||||||||||||  |||| ||||||   ||||||||||||||||    
T  10053862 attttactttattacaaaaatcagtcctcatacaaaatattaattac 10053816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 22616842 - 22616715
Alignment:
Q  42 ttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttacttt 141  Q
    ||||||| |||||| ||||| |||||||||||| ||||  ||  | ||||||||||||  |||| |  || ||||||||| ||| |||||| ||||| ||    
T  22616842 ttttttggaaaagttattttgtttagccaatagtataa--ctgca-gtcatgtcagctagtgtcctgctggtggaccactctaaaactaaactttacctt 22616746  T
Q  142 attacaaataagtccttgaacaaaatattaa 172  Q
    ||||||||| ||||||   ||||||||||||    
T  22616745 attacaaatcagtcctcatacaaaatattaa 22616715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 27579307 - 27579248
Alignment:
Q  113 tggaccactataagactaaattttactttattacaaataagtccttgaacaaaatattaa 172  Q
    ||||||||| ||| |||||| ||||| ||||||||||| | ||||| |||||||||||||    
T  27579307 tggaccactctaaaactaaactttaccttattacaaatcattccttaaacaaaatattaa 27579248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 21321106 - 21321065
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataa 79  Q
    |||||||||||||||||| ||||| |||||||||||| ||||    
T  21321106 tgacttttttgaaaaagttattttgtttagccaatagtataa 21321065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 175
Target Start/End: Original strand, 33848039 - 33848176
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatttta 137  Q
    ||||| |||||||||||| | ||| ||||  |||||  |||||| |||||| ||||| ||||  |||| |  |||| ||| ||| |||||||||| ||||    
T  33848039 tgactattttgaaaaagttactttgtttaatcaataatataattgttaatgacatgtaagctagtgtcatgctgatagactactctaagactaaacttta 33848138  T
Q  138 ctttattacaaataagtccttgaacaaaatattaatta 175  Q
    | |||||| |||| | ||||   |||||||||||||||    
T  33848139 ccttattaaaaatcaatcctcatacaaaatattaatta 33848176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 4487728 - 4487884
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||| |||||| |||||||||||||| ||||||||||||| |||| ||||||||||| || || ||| ||||||||||  ||||||||||||||||    
T  4487728 ctatggtgcagttaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggac 4487827  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    |||| ||| |||||||||||||||||||||||| ||||||   |||||| |||||||    
T  4487828 cactgtaacactaaattttactttattacaaatcagtcctcatacaaaacattaatt 4487884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 25441863 - 25441707
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||| ||| || |||||||||||||| ||||||||||||| |||| ||||||||||| || || ||||||||| ||||  ||||||||||||||||    
T  25441863 ctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgtcatgttagctagtgtctttgtgatggac 25441764  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    |||| ||| ||||||||||||||||| |||||| ||||||   ||||||||||||||    
T  25441763 cactgtaacactaaattttactttatcacaaatcagtcctcatacaaaatattaatt 25441707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 18306553 - 18306709
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||||||| |||||||||||||| ||| |||||||| |||||||||||| |||| | || ||| ||||||||||  ||||||  ||||||||    
T  18306553 ctatggtgtagttaaggaaatgacttttttggaaatgtcattttgtttagccaatagaataaatgttgatgccatgtcagctagtgtcttgctgatggac 18306652  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    |||| | |||  ||||||||| ||||||||||| | |||| | ||||||||||||||    
T  18306653 cactgttagatcaaattttaccttattacaaatcaatcctcgtacaaaatattaatt 18306709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 6613680 - 6613819
Alignment:
Q  33 gaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaa 132  Q
    |||| |||||||||||||||||| ||||| ||||| |||||| |||| |||||||| ||||||| || |||   |  || ||||||||| ||||||||||    
T  6613680 gaaactgacttttttgaaaaagttattttgtttagtcaatagtataagtcttaatgccatgtcaactaatggtctgctggtggaccactctaagactaaa 6613779  T
Q  133 ttttactttattacaaataagtccttgaacaaaatattaa 172  Q
     || || ||||||||||| | ||||   ||||||||||||    
T  6613780 cttcaccttattacaaatgaatcctcatacaaaatattaa 6613819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 11083852 - 11083978
Alignment:
Q  40 acttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttact 139  Q
    |||||||||||||||| |||||||||||  ||||| |||||| | ||| |||||||||||  ||||   ||||| ||||||| ||| |||||  ||||      
T  11083852 acttttttgaaaaagttattttatttagttaatagtataattgtcaatatcatgtcagctagtgtc---gtgatagaccactctaaaactaagctttatc 11083948  T
Q  140 ttattacaaataagtccttgaacaaaatat 169  Q
    ||||||||||| |||||||  |||||||||    
T  11083949 ttattacaaatcagtccttatacaaaatat 11083978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 26819686 - 26819745
Alignment:
Q  118 cactataagactaaattttacttt-attacaaataagtccttgaacaaaatattaattac 176  Q
    ||||||| |||||||||||||||| |||||||||||| | ||| ||||||||||||||||    
T  26819686 cactataggactaaattttacttttattacaaataagccattgtacaaaatattaattac 26819745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 4104372 - 4104260
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatttta 137  Q
    |||||||||||||||||| ||||| | | | |||||| |||||| |  |||||||||||| |  |||| |  || ||||||||| ||| |||||| |||     
T  4104372 tgacttttttgaaaaagttattttgtcttgtcaatagtataattgtcgatgtcatgtcagttagtgtcgtgctggtggaccactctaaaactaaactttg 4104273  T
Q  138 ctttattacaaat 150  Q
    | |||||||||||    
T  4104272 ccttattacaaat 4104260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 25470797 - 25470641
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||| ||| || |||||||||||||| ||||||||||||| |||| ||||||||||| || || ||| |||||||||   ||||||||||||||||    
T  25470797 ctatggtgcagtcaaaaaaatgacttttttaaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggac 25470698  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaatt 174  Q
    |||  ||| |||||||||||||||||||||||| |||||| | ||||||||||||||    
T  25470697 caccgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaatt 25470641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 8759612 - 8759497
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||  ||||||| ||||||||    
T  8759612 ctatggtgtagccaagaaaatgacttttttgaaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttttgatggac 8759513  T
Q  118 cactataagactaaat 133  Q
    |||| ||||| |||||    
T  8759512 cactgtaagattaaat 8759497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 49002576 - 49002446
Alignment:
Q  42 ttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttacttt 141  Q
    |||||||||||||| ||||||||||  |||||| |||||| |  |||||||  ||||| ||||| |  || ||||||||| ||| |||||| ||||| |     
T  49002576 ttttttgaaaaagttattttatttaatcaatagtataattgtcgatgtcatagcagctaatgtcctgctggtggaccactctaaaactaaactttacctc 49002477  T
Q  142 attacaaataagtccttgaacaaaatattaa 172  Q
    ||||||||| ||||||   ||||||||||||    
T  49002476 attacaaatcagtcctcatacaaaatattaa 49002446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 10675026 - 10675085
Alignment:
Q  113 tggaccactataagactaaattttactttattacaaataagtccttgaacaaaatattaa 172  Q
    |||| |||| |||||||||| ||||||||||||||||| ||||||   ||||||||||||    
T  10675026 tggatcactctaagactaaactttactttattacaaattagtcctcatacaaaatattaa 10675085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 8133298 - 8133368
Alignment:
Q  85 aatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttactttattacaaataagtc 155  Q
    |||||||||||||||| ||||||  || || |||||| ||| |||||| ||||| ||||||||||| ||||    
T  8133298 aatgtcatgtcagctggtgtcttgctggtgaaccactctaaaactaaactttaccttattacaaatcagtc 8133368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 23402045 - 23402198
Alignment:
Q  19 tatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggacc 118  Q
    ||||||| ||| || ||| |||||||||| ||||||| ||||| |||||||||||| |||| |    |||| |||||||||  |||| |  ||  |||||    
T  23402045 tatggtgcagtcaaaaaactgacttttttaaaaaagttattttgtttagccaatagtataactgccgatgttatgtcagctagtgtcatgttgggggacc 23402144  T
Q  119 actataagactaaattttactttattacaaataagtccttgaacaaaatattaa 172  Q
    ||| ||| |||||| ||||   |||||||||| |||| | | ||||||||||||    
T  23402145 actctaaaactaaactttatcctattacaaatcagtcatcgtacaaaatattaa 23402198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 8213 - 8371
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||| |||||| |||| |  || || ||||||||||| |||||||  ||||||||    
T  8213 ctatggtgttgtcaagaaaatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggac 8312  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    |||| || ||||||| ||||||||||||||| | ||||||   ||||||||||||||||    
T  8313 cactctacgactaaactttactttattacaacttagtcctcatacaaaatattaattac 8371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 1872585 - 1872742
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||| || ||||| || |||| || || ||| |||||||||| ||||||||||||||||     
T  1872585 ctatggtgtagtcaagaaaatgacttttttgaaaaagtcattttgttcagccattaacatagttgttgatgccatgtcagctaatgtctttgtgatgga- 1872683  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    || | ||| || |||||||||||||||| |||| |||||||  ||||||||||||||||    
T  1872684 cattgtaaaaccaaattttactttattataaatcagtccttatacaaaatattaattac 1872742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 34686131 - 34685997
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtca-gctgatgtctttgtgatggaccactataagactaaatttt 136  Q
    ||||||||||| |||||| ||||| |||||  ||||| |||| | |||||||||||||| || | |||| |   | | ||||||| |||||||||| |||    
T  34686131 tgacttttttggaaaagttattttttttagttaatagtataactgttaatgtcatgtcaagcag-tgtcctgccggtagaccactctaagactaaacttt 34686033  T
Q  137 actttattacaaataagtccttgaacaaaatattaa 172  Q
    |||||||||||||| ||||||   ||||||||||||    
T  34686032 actttattacaaatcagtcctcatacaaaatattaa 34685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 3038761 - 3038649
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatttta 137  Q
    |||||||||| ||||| | ||||| |||||||||||| | ||||  | ||||||||||| |   ||||||  || ||||||||| ||| |||||| ||||    
T  3038761 tgacttttttaaaaaaattattttgtttagccaatagtagaattgctgatgtcatgtcaacaagtgtcttgctggtggaccactctaaaactaaacttta 3038662  T
Q  138 ctttattacaaat 150  Q
    | |||||||||||    
T  3038661 ccttattacaaat 3038649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 23176479 - 23176598
Alignment:
Q  38 tgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaatttta 137  Q
    |||||||||||||||||| ||||| ||||  |||||| ||||||    || |||||||||||  |||| |  |||||||||||| ||| |||||  ||||    
T  23176479 tgacttttttgaaaaagttattttgtttattcaatagtataatttccgatatcatgtcagctagtgtcatgttgatggaccactctaaaactaagcttta 23176578  T
Q  138 ctttattacaaataagtcct 157  Q
      ||||||||||| ||||||    
T  23176579 tcttattacaaattagtcct 23176598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 422359 - 422201
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||| |||||| |||| |  || || ||||||||||| |||||||  ||||||||    
T  422359 ctatggtgttgtcaagaaaatgacttttttgaaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggac 422260  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    |||| || ||||||| ||||||||||||||| | ||||||   ||||||||||||||||    
T  422259 cactctacgactaaactttactttattacaacttagtcctcatacaaaatattaattac 422201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 28013079 - 28012921
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggac 117  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||  |||||||||||||||||| || ||||||||||||||  ||||||  |||| |||    
T  28013079 ctatggtgtagtcaagaaaatgtcttttttgaaaaagttattttggttagccaatagcataattgttgatgtcatgtcagctagtgtcttgctgatagac 28012980  T
Q  118 cactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    ||    |||| |||| ||||| ||||||||||| |||||| | | ||| ||||||||||    
T  28012979 catcgcaagagtaaactttaccttattacaaatcagtcctcgtaaaaactattaattac 28012921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 7843161 - 7843098
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataatt 81  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||  || |||||||||||||||    
T  7843161 ctatggtgtagtcaagaaaatgactttttttaaaaagttattttggttggccaatagcataatt 7843098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 26970896 - 26970830
Alignment:
Q  19 tatggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattctta 85  Q
    ||||||||||| |  ||| |||||||||||||||||| |||||||||  ||||||||||||| ||||    
T  26970896 tatggtgtagtcagtaaactgacttttttgaaaaagttattttattttaccaatagcataatcctta 26970830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 15964462 - 15964337
Alignment:
Q  32 agaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaa 131  Q
    ||||||| | ||||||  |||| | ||||| |||||||||||| |||| | |  ||||||||||||||  |||| |  | ||| |||||| ||| |||||    
T  15964462 agaaaattatttttttagaaaaattattttgtttagccaatagtataactgtcgatgtcatgtcagctagtgtcctactaatgtaccactctaaaactaa 15964363  T
Q  132 attttactttattacaaataagtcct 157  Q
    ||||||| ||||||||||| ||||||    
T  15964362 attttaccttattacaaatcagtcct 15964337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 5500725 - 5500598
Alignment:
Q  22 ggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccact 121  Q
    |||| |||||| ||| | |||||||||||||||| ||||| |||||| ||||| |||| | |  ||||||||||||||  ||| | |||  |||| ||||    
T  5500725 ggtgcagttaaaaaactaacttttttgaaaaagttattttgtttagctaatagtataactatcgatgtcatgtcagctagtgt-tctgtcgtggatcact 5500627  T
Q  122 ataagactaaattttactttattacaaat 150  Q
     ||| |||||||||||| |||||| ||||    
T  5500626 ctaaaactaaattttaccttattataaat 5500598  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 16135676 - 16135544
Alignment:
Q  41 cttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccactataagactaaattttactt 140  Q
    ||||||||||||||| ||||| |||||| ||||| |||| | |  ||||||||||| ||  |||| |  || ||||||||| ||| |||||| |||||      
T  16135676 cttttttgaaaaagttattttgtttagctaatagtataactgtcgatgtcatgtcaactagtgtcatactggtggaccactctaaaactaaactttaccc 16135577  T
Q  141 tattacaaataagtccttgaacaaaatattaat 173  Q
    |||||||||| ||| ||   |||||||||||||    
T  16135576 tattacaaatcagttctcatacaaaatattaat 16135544  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 47555127 - 47554977
Alignment:
Q  22 ggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataattcttaatgtcatgtcagctgatgtctttgtgatggaccact 121  Q
    |||| ||||| |||| |||||||||||||||||| ||||| |||| ||||||| |||| | || | | ||||||| ||  |||| |  |  | |||||||    
T  47555127 ggtgcagttaggaaactgacttttttgaaaaagttattttgtttaaccaatagtataactgttgaggccatgtcaactagtgtcctgctagtagaccact 47555028  T
Q  122 ataagactaaattttactttattacaaataagtccttgaacaaaatattaa 172  Q
     ||||| |||| ||||| ||||||||||| |||| |   ||||||||||||    
T  47555027 ctaagagtaaactttaccttattacaaatcagtcatcatacaaaatattaa 47554977  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 4146696 - 4146753
Alignment:
Q  22 ggtgtagttaagaaaatgacttttttgaaaaagtcattttatttagccaatagcataa 79  Q
    |||| |||||||||| |||||||||||||||||| ||||| ||||  |||||| ||||    
T  4146696 ggtgaagttaagaaactgacttttttgaaaaagttattttgtttaatcaatagaataa 4146753  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 51129264 - 51129223
Alignment:
Q  24 tgtagttaagaaaatgacttttttgaaaaagtcattttattt 65  Q
    ||||||||||||| |||||||||||||||||| | |||||||    
T  51129264 tgtagttaagaaattgacttttttgaaaaagttaatttattt 51129223  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 42663235 - 42663283
Alignment:
Q  18 ctatggtgtagttaagaaaatgacttttttgaaaaagtcattttattta 66  Q
    |||||||| ||| | |||| |||||||||||||||||| ||||||||||    
T  42663235 ctatggtgcagtcacgaaattgacttttttgaaaaagttattttattta 42663283  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 11443 - 11503
Alignment:
Q  116 accactataagactaaattttactttattacaaataagtccttgaacaaaatattaattac 176  Q
    |||||| |||||||||||||||  ||||||||||| ||||||   |||||||| |||||||    
T  11443 accactctaagactaaattttatcttattacaaatcagtcctcatacaaaataataattac 11503  T

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