View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_15 (Length: 396)
Name: NF11382_low_15
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 46323808 - 46323446
Alignment:
| Q |
19 |
cacagagaatcaaaagattacaagttcaagtttctatagtagttcaatcctccaacaaagcccgttttctcaaatttggaaacaaaataagcaagatcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46323808 |
cacagagaatcaaaagattacaagttcaagtttctatagtagttcaatcctccaacaaagcccgttttctcaaatttggaaacaaaataagcaagatcat |
46323709 |
T |
|
| Q |
119 |
cttctgtgagccaagaaggcaatttgtcaggggtatccgggttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46323708 |
cttctgtgagccaagaaggcaatttgtcaggggtgtccgggttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagttgt |
46323609 |
T |
|
| Q |
219 |
gagggtacttttcatcacacatgcagtgccaacttcagccatctgagcttccattttgcccggttcctgtgatatcggatnnnnnnncaatttctgaaaa |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
46323608 |
gagggtacttttcatcacatatgcagtgccaacttcagccatctgagcttccattttgcccggttcctgtgataacggataaaaaaacaatttctgaaaa |
46323509 |
T |
|
| Q |
319 |
caacttataatttctttatttatacctgcaatatgacaggtagaccctaacatatttaatatt |
381 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46323508 |
caacttataatttctttatttatacctgcaatatgacaggtagaccctaacatgtttaatatt |
46323446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 46328275 - 46328013
Alignment:
| Q |
30 |
aaaagattacaagttcaagtttctatagtagttcaatcctccaacaaagcccgttttctcaaatttggaaacaaaataagcaagatcatcttctgtgagc |
129 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46328275 |
aaaaaattacaagttaaagtttctatagtagttcaatcctccagtaaagcctgttttctcaaatttagaaacaaaataagcaagatcatcttctgtgagc |
46328176 |
T |
|
| Q |
130 |
caagaaggcaatttgtcaggggtatccgggttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttt |
229 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || ||| |
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| T |
46328175 |
caagagggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttttccgagttgtgaggatatttt |
46328076 |
T |
|
| Q |
230 |
tcatcacacatgcagtgccaacttcagccatctgagcttccattttgcccggttcctgtgata |
292 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46328075 |
tcatcacatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgata |
46328013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 46523140 - 46523416
Alignment:
| Q |
17 |
agcacagagaatcaaaa-gattacaagttcaagtttctatagtagttcaatcctccaacaaagcccgttttctcaaatttggaaacaaaataagcaagat |
115 |
Q |
| |
|
|||||| |||||||||| ||||||||||| |||||||| |||||||||||| ||||| ||||| ||||||||||||||||| |||||||||| ||| | |
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| T |
46523140 |
agcacaaagaatcaaaaagattacaagttaaagtttctgtagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagtaaggt |
46523239 |
T |
|
| Q |
116 |
catcttctgtgagccaagaaggcaatttgtcaggggtatccgggttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagt |
215 |
Q |
| |
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|||||||||| |||||||| || || ||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46523240 |
catcttctgtaagccaagagggtaaggtgtcaggagtatctgagttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagt |
46523339 |
T |
|
| Q |
216 |
tgtgagggtacttttcatcacacatgcagtgccaacttcagccatctgagcttccattttgcccggttcctgtgata |
292 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
46523340 |
tgtgagggtacttttcatcacatatgcagtgccaacttcagccatctcagcttccattttgcctggttcctgtgata |
46523416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 46530569 - 46530844
Alignment:
| Q |
17 |
agcacagagaatcaaaagattacaagttcaagtttctatagtagttcaatcctccaacaaagcccgttttctcaaatttggaaacaaaataagcaagatc |
116 |
Q |
| |
|
|||||| ||||||||| ||||||| ||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| || |
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| T |
46530569 |
agcacaaagaatcaaaggattacacgttaaagtttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtc |
46530668 |
T |
|
| Q |
117 |
atcttctgtgagccaagaaggcaatttgtcaggggtatccgggttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagtt |
216 |
Q |
| |
|
|||||||| |||||||| || || ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |
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| T |
46530669 |
ttcttctgtaagccaagagggtaaggtgtcaggagtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagtt |
46530768 |
T |
|
| Q |
217 |
gtgagggtacttttcatcacacatgcagtgccaacttcagccatctgagcttccattttgcccggttcctgtgata |
292 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
46530769 |
gtgaggatatttttcatcacatatgcagtgccaacttcagccatctcagcttccattttgcctggttcctgtgata |
46530844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 46519597 - 46519873
Alignment:
| Q |
17 |
agcacagagaatcaaaagattacaagttcaagtttctatagtagttcaatcctccaacaaagcccgttttctcaaatttggaaacaaaataagcaagatc |
116 |
Q |
| |
|
|||||| |||| || || |||||||||| |||||||||||||| |||||||||||| ||||| || |||||| ||||||| ||||||||||||||||| |
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| T |
46519597 |
agcacaaagaaacagaaaattacaagttaaagtttctatagtaattcaatcctccagtgaagccagtcttctcatatttggagacaaaataagcaagatc |
46519696 |
T |
|
| Q |
117 |
atcttctgtgagccaagaaggcaatttgtcaggggtatccgggttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagtt |
216 |
Q |
| |
|
|||||||||||||||| ||||| | || ||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||| |
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|
| T |
46519697 |
gtcttctgtgagccaagtgggcaaggtttctggggtatccggattgaatcctgttccaaactctcctttgggaagtattggaggaccagttttgcgagtt |
46519796 |
T |
|
| Q |
217 |
gtgagggtacttttcatcacacatgcagtgccaacttcagccatctgagcttccattttgcccggttcctgtgatat |
293 |
Q |
| |
|
|||||| | |||||| |||| ||||||||||||| ||||| |||| |||||| |||||||| ||||||||| |||| |
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|
| T |
46519797 |
gtgaggacatttttcagcacatatgcagtgccaacctcagctatctcagcttctattttgccaggttcctgtaatat |
46519873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 286
Target Start/End: Original strand, 46464376 - 46464617
Alignment:
| Q |
48 |
gtttctatagtagttcaatcctccaacaaagcccgttttctcaaatttggaaacaaaataagcaagatcatcttct---gtgagccaagaaggcaatttg |
144 |
Q |
| |
|
|||||| ||||| |||||||||||| ||||| ||||| |||||||| || ||||| |||||||| || |||||| || |||||||| | ||| || |
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| T |
46464376 |
gtttctgtagtaattcaatcctccagtgaagcctgttttgtcaaatttagagacaaagtaagcaaggtcgtcttcttctgtaagccaagaggacaaggtg |
46464475 |
T |
|
| Q |
145 |
tcaggggtatccgggttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttttcatcacacatgcag |
244 |
Q |
| |
|
| ||| |||||||||||||||||||||| |||| || ||||||| |||||||||||| ||| ||| ||||||||| || |||||| |||| | || | |
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|
| T |
46464476 |
tatgggatatccgggttgaatccagttccgtactcgccgttgggaagcattggaggaccaatttcccgtgttgtgaggatatttttcagcacataagcgg |
46464575 |
T |
|
| Q |
245 |
tgccaacttcagccatctgagcttccattttgcccggttcct |
286 |
Q |
| |
|
||||||||||| |||||| |||||||||||| || ||||||| |
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|
| T |
46464576 |
tgccaacttcaaccatcttagcttccattttacctggttcct |
46464617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 88830 - 88663
Alignment:
| Q |
36 |
ttacaagttcaagtttctatagtagttcaatcctccaacaaagcccgttttctcaaatttggaaacaaaataagcaagatcatcttctgtgagccaagaa |
135 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||||| ||||| ||||| | ||||| | |||| ||||| ||||||| ||||| | |||||||| |
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| T |
88830 |
ttacaagctcaaatttctatagtagttcaaccctccagtgaagccagttttgttgaatttagtaacataataatcaagatcttcttcggaaagccaagat |
88731 |
T |
|
| Q |
136 |
ggcaatttgtcaggggtatccgggttgaatccagttccaaactctcccttgggaaatattggaggacc |
203 |
Q |
| |
|
|| || | || || ||||||| ||||||||||||||| ||||||| || || || ||||||||||| |
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|
| T |
88730 |
ggtaagatatctggcatatccggattgaatccagttccatactctccttttgggaaaattggaggacc |
88663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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