View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11382_low_17 (Length: 346)

Name: NF11382_low_17
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11382_low_17
NF11382_low_17
[»] chr7 (3 HSPs)
chr7 (184-286)||(12808330-12808432)
chr7 (1-53)||(12808565-12808617)
chr7 (1-53)||(37433390-37433442)
[»] chr6 (3 HSPs)
chr6 (184-286)||(2634152-2634254)
chr6 (1-53)||(2633967-2634019)
chr6 (1-53)||(12083787-12083839)
[»] scaffold0103 (2 HSPs)
scaffold0103 (184-286)||(5755-5857)
scaffold0103 (1-53)||(5990-6042)
[»] chr8 (2 HSPs)
chr8 (194-285)||(4638118-4638209)
chr8 (8-51)||(4637951-4637994)
[»] chr5 (2 HSPs)
chr5 (1-53)||(21838094-21838146)
chr5 (1-53)||(4807075-4807127)
[»] chr4 (1 HSPs)
chr4 (1-40)||(27896812-27896851)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 12808432 - 12808330
Alignment:
Q  184 tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12808432 tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc 12808333  T
Q  284 agt 286  Q
    |||    
T  12808332 agt 12808330  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12808617 - 12808565
Alignment:
Q  1 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12808617 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 12808565  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37433390 - 37433442
Alignment:
Q  1 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 53  Q
    ||||||||||||||||| |||||| | ||||||||||||| ||||||||||||    
T  37433390 tttgcaacttaatcacaacttattacttttgtctcaacatcttgcaattgtct 37433442  T

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Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 2634152 - 2634254
Alignment:
Q  184 tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2634152 tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc 2634251  T
Q  284 agt 286  Q
    |||    
T  2634252 agt 2634254  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2633967 - 2634019
Alignment:
Q  1 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2633967 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 2634019  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12083787 - 12083839
Alignment:
Q  1 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 53  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  12083787 tttgcaacttaatcacagcttattacttttgtctcaacatcttgcaattgtct 12083839  T

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Target: scaffold0103 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 5857 - 5755
Alignment:
Q  184 tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5857 tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagttgagaaacataatc 5758  T
Q  284 agt 286  Q
    |||    
T  5757 agt 5755  T

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Target: scaffold0103; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6042 - 5990
Alignment:
Q  1 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6042 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 5990  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 4638118 - 4638209
Alignment:
Q  194 taattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatcag 285  Q
    |||||| |||||||| || ||||||| ||||||||||| ||||||||||||  |||||||||||||||||||||||| | ||||||| ||||    
T  4638118 taattgacataaacagcaccaactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagataaaaaacatactcag 4638209  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 4637951 - 4637994
Alignment:
Q  8 cttaatcacagcttattgcatttgtctcaacattttgcaattgt 51  Q
    |||||||||| |||||||| |||||||||| |||||||||||||    
T  4637951 cttaatcacaacttattgcttttgtctcaagattttgcaattgt 4637994  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21838146 - 21838094
Alignment:
Q  1 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 53  Q
    |||||||||||||||||||||||| | ||||| ||||||| ||||||||||||    
T  21838146 tttgcaacttaatcacagcttattacttttgtgtcaacatattgcaattgtct 21838094  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4807075 - 4807127
Alignment:
Q  1 tttgcaacttaatcacagcttattgcatttgtctcaacattttgcaattgtct 53  Q
    |||||||||| |||||| |||||| | ||||| ||||||| ||||||||||||    
T  4807075 tttgcaacttgatcacaacttattacttttgtgtcaacatattgcaattgtct 4807127  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27896812 - 27896851
Alignment:
Q  1 tttgcaacttaatcacagcttattgcatttgtctcaacat 40  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  27896812 tttgcaacttaatcacagcttattacttttgtctcaacat 27896851  T

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