View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_18 (Length: 343)
Name: NF11382_low_18
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 37365905 - 37366218
Alignment:
| Q |
18 |
aaattctccatcttcttcacaacacaaaaacccaaactcatctcccacaaatccacgctcatttcctccgccatggcctccaccattccaaccaaatcct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37365905 |
aaattctccatcttcttcacaacacaaaaacccaaactcatctcccacaaatccacgctcatttcctccgccatggcctccaccattccaaccaaatcct |
37366004 |
T |
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| Q |
118 |
ctcccacttcgtctccgtttgcacctctcttcaccaaattccttacgccacaaccatcttcaaccatacccatcaccccaacattctcctcttcaactcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37366005 |
ctcccacttcgtctccgtttgcacctctcttcaccaaattccttacgccacaaccatcttcaaccatacccatcaccccaacattctcctcttcaactcc |
37366104 |
T |
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| Q |
218 |
attatcaaagcccattcttcattcccaccttttcatcaatccttccactttttcaacctcatgaaaataacccacaacattttacctgataacttcactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37366105 |
attatcaaagcccattcttcattcccaccttttcatcaatccttccactttttcaacctcatgaaaatgacccacaacattttacctgataacttcactt |
37366204 |
T |
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| Q |
318 |
tcccacctttgctt |
331 |
Q |
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|||||||||||||| |
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| T |
37366205 |
tcccacctttgctt |
37366218 |
T |
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