View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11382_low_20 (Length: 336)

Name: NF11382_low_20
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11382_low_20
NF11382_low_20
[»] chr5 (10 HSPs)
chr5 (1-318)||(13393819-13394136)
chr5 (150-280)||(13389570-13389700)
chr5 (1-80)||(13389412-13389491)
chr5 (150-316)||(13385744-13385910)
chr5 (155-281)||(13453453-13453579)
chr5 (1-80)||(13385591-13385670)
chr5 (154-266)||(13425953-13426065)
chr5 (1-52)||(13412939-13412990)
chr5 (149-266)||(13419063-13419180)
chr5 (167-219)||(13412762-13412814)
[»] chr4 (2 HSPs)
chr4 (152-292)||(47600857-47600997)
chr4 (1-84)||(47601074-47601157)
[»] chr8 (1 HSPs)
chr8 (155-288)||(28431150-28431283)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 13393819 - 13394136
Alignment:
Q  1 caaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaatacataatcaaagttagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13393819 caaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaatacataatcaaagttagaat 13393918  T
Q  101 aatattcataattggaaatggtaattgattaattaataaatgtcgatgattttataggctgcgatgggtactttggatggcatcatcgatacagtttcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13393919 aatattcataattggaaatggtaattgattaattaataaatgtcgatgattttataggctgcgatgggtactttggatggcatcatcgatacagtttcag 13394018  T
Q  201 cggatcatcctctcttacctctagttggtttattaaaatatcacggaaaacttgtaatggtcggtgcacctgacaagcctccggagctccctcacattcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13394019 cggatcatcctctcttacctctagttggtttattaaaatatcacggaaaacttgtaatggtcggtgcacctgacaagcctccggagctccctcacattcc 13394118  T
Q  301 tttaataatgggtaagtt 318  Q
    ||||||||||||||||||    
T  13394119 tttaataatgggtaagtt 13394136  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 13389570 - 13389700
Alignment:
Q  150 ttttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaa 249  Q
    |||||||| ||||  |||||||||||||||| ||||||||||||||||||||  |||||||| ||||||| ||| |||| ||||| || | ||| |||||    
T  13389570 ttttatagtctgcattgggtactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacccctaattggattattgaagtctcatggaaa 13389669  T
Q  250 acttgtaatggtcggtgcacctgacaagcct 280  Q
    |||||||||||| |||| |||||||||||||    
T  13389670 acttgtaatggttggtgtacctgacaagcct 13389700  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13389412 - 13389491
Alignment:
Q  1 caaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaa 80  Q
    |||||||||||||||||||||| || ||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  13389412 caaagagaaagaagcaatagaacacttaggagccgattcatttctgataagtcgtgaccaagagaaaatgcaggtacaaa 13389491  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 316
Target Start/End: Original strand, 13385744 - 13385910
Alignment:
Q  150 ttttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaa 249  Q
    |||||||| ||||  |||||||||||||||| ||||| ||||| ||||||||  |||||||| |||| || ||| |||| ||| | || | ||| |||||    
T  13385744 ttttatagtctgcactgggtactttggatggtatcattgataccgtttcagcaaatcatcctgtcttgccactacttggattactgaagtctcatggaaa 13385843  T
Q  250 acttgtaatggtcggtgcacctgacaagcctccggagctccctcacattcctttaataatgggtaag 316  Q
    |||||||||||| |||| |||||||||||||| |||| ||||   | ||||||||||  ||||||||    
T  13385844 acttgtaatggttggtgtacctgacaagcctctggagatccccgtctttcctttaattttgggtaag 13385910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 13453579 - 13453453
Alignment:
Q  155 taggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaaacttg 254  Q
    |||||||| | || |||||||||||| || ||||| |||||||||||||||||||| || ||||||||  |||||||| | || | ||| ||||| ||||    
T  13453579 taggctgcaacggctactttggatggtattatcgacacagtttcagcggatcatccgctattacctctgattggtttactcaagtctcatggaaagcttg 13453480  T
Q  255 taatggtcggtgcacctgacaagcctc 281  Q
    ||||||| ||||||||||| |||||||    
T  13453479 taatggttggtgcacctgaaaagcctc 13453453  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13385591 - 13385670
Alignment:
Q  1 caaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaa 80  Q
    |||||| || ||||||| |||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  13385591 caaagaaaaggaagcaaaagaacacttaggagctgattcatttctgataagtcgtgaccaagataaaatgcaggtacaaa 13385670  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 13426065 - 13425953
Alignment:
Q  154 ataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaaactt 253  Q
    ||||||||| |||||||||||| |||| || ||||| || ||||| ||   ||||||| |||||||  |  |||||||||| |||| | | |||||||||    
T  13426065 ataggctgcaatgggtactttgaatggtattatcgacactgtttcggcaagtcatcctatcttaccattgattggtttattgaaatctaatggaaaactt 13425966  T
Q  254 gtaatggtcggtg 266  Q
    |||||||| ||||    
T  13425965 gtaatggttggtg 13425953  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13412990 - 13412939
Alignment:
Q  1 caaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagt 52  Q
    |||||| || |||||||||||| || ||||||||||||||||||| ||||||    
T  13412990 caaagaaaaggaagcaatagaacacttaggagctgattcatttctgataagt 13412939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 13419180 - 13419063
Alignment:
Q  149 attttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaa 248  Q
    |||| |||| |||| |||||||||||| |||| || || || |||||||| ||| | |||||| | |||||  | |||| |||||| |||| | | ||||    
T  13419180 atttcatagactgcaatgggtactttgaatggtattattgacacagtttcggcgaaccatcctattttaccattggttgctttattgaaatctaatggaa 13419081  T
Q  249 aacttgtaatggtcggtg 266  Q
    ||||||||||||| ||||    
T  13419080 aacttgtaatggttggtg 13419063  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 13412814 - 13412762
Alignment:
Q  167 ggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacc 219  Q
    |||||||||||||| || || || ||||||||||| | |||||||||||||||    
T  13412814 ggtactttggatggtattattgacacagtttcagctgttcatcctctcttacc 13412762  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 292
Target Start/End: Complemental strand, 47600997 - 47600857
Alignment:
Q  152 ttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaaac 251  Q
    |||||||||||  ||  |||||||||||| ||||| || ||||||||||| || |||||||||| ||||||| |||| ||| | || | ||| |||||||    
T  47600997 ttataggctgcagtgaatactttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaac 47600898  T
Q  252 ttgtaatggtcggtgcacctgacaagcctccggagctccct 292  Q
    |||||||||| ||||| || |  ||||||| ||||||||||    
T  47600897 ttgtaatggttggtgctccagcgaagcctctggagctccct 47600857  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 47601157 - 47601074
Alignment:
Q  1 caaagagaaagaagcaatagaaaacctaggagctgattcatttcttataagtcatgaccaagataaaatgcaggtacaaataca 84  Q
    |||||| |||||||||| ||||  | |||||||||| |||||| | ||||||| |||||||||||| ||||| ||| |||||||    
T  47601157 caaagaaaaagaagcaagagaatgcttaggagctgactcatttttgataagtcgtgaccaagataagatgcaagtataaataca 47601074  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 288
Target Start/End: Original strand, 28431150 - 28431283
Alignment:
Q  155 taggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacggaaaacttg 254  Q
    |||||||| | ||| || |||||||| ||||| || |||||||| || |  |||||| | |||||| |  ||||| | || |||| ||| ||||||||||    
T  28431150 taggctgcaacgggcaccttggatggtatcattgacacagtttctgccgtccatcctttgttacctttgattggtcttttgaaatctcatggaaaacttg 28431249  T
Q  255 taatggtcggtgcacctgacaagcctccggagct 288  Q
    | ||||| ||||||||||| ||||||| ||||||    
T  28431250 ttatggttggtgcacctgagaagcctctggagct 28431283  T

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