View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_23 (Length: 311)
Name: NF11382_low_23
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 3643527 - 3643827
Alignment:
| Q |
1 |
tcaacaaacgccacctacatcccacaagagataacataatagatatcacaattcaaaagagactgagaattatggcatgcggtcgacggtgcagtggagg |
100 |
Q |
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| T |
3643527 |
tcaacaaacgccacctacatcccacaagagataacataatagatatcaaaattcaaaagagactgagaattatggcatacggtcgacggtgcagtggagg |
3643626 |
T |
|
| Q |
101 |
tcagcgtcggagggaggcggccgctgatggcactttttgatggtgagtggtggttgaagtgaagtgcagtggtggtttctctttctcatttattcaga-- |
198 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
3643627 |
tcagcgtcggagggaggcggccgctggtggcactttttgatggtgagtggtggttgaagggaagtgcagtggtggtttccctttctcatttattcagatt |
3643726 |
T |
|
| Q |
199 |
nnnnnnnnnnnnnnnnntcaagtgtgccacatggcacgtcttgattggttaatggttgatgactttgtcgtcataatgacatcgaagtgggatcctttgc |
298 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3643727 |
ttttttaaaaaaataaatcaagtgtgccacatggcacgtcttgattgattaatggttgatgactttgtcgtcataatgacatcgaagtgggatcctttgc |
3643826 |
T |
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| Q |
299 |
t |
299 |
Q |
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| |
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| T |
3643827 |
t |
3643827 |
T |
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