View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_24 (Length: 310)
Name: NF11382_low_24
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 19339769 - 19339926
Alignment:
| Q |
18 |
ccaatattacaaatcaacccagaaagaaaccaaaaatcaaagttttagcttttttccctttaagaaccccaggaattaggaaaaagcaaaaactatgcga |
117 |
Q |
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| T |
19339769 |
ccaatattacaaatcaacccagaaagaaaccaaaaatcaaagttttagcttttttccctttaagaaccccaggaattaggaaaaagcaaaaactatgcga |
19339868 |
T |
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| Q |
118 |
atgaagaaaaatcaacgacccataagaaactaaaccgagaatcagtgacccatttggt |
175 |
Q |
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| T |
19339869 |
atgaagaaaaatcaacgacccagaagaaactaaaccgagaatcagtgacccatttggt |
19339926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 19339988 - 19340041
Alignment:
| Q |
237 |
cgaagttttgctaagaaaaacgctagaaagagaaccctaagatacgaaatcgat |
290 |
Q |
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| T |
19339988 |
cgaagttttgctaagaaaaacgctagaaagagaaccctaagatacgaaatcgat |
19340041 |
T |
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