View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_28 (Length: 283)
Name: NF11382_low_28
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 52930240 - 52930496
Alignment:
| Q |
14 |
ttattatcattgacagatacagggtcgtaacgtttattcttgctggactcttcctcgggtagttcttcttcgtattcgtaaacgtcgctgtcgatttcat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52930240 |
ttattatcattgacagatacagggtcgtaacgtttattcttgctggactcttcctcgggtagttcttcttcgtattcgtaaacgtcgctgtcgatttcat |
52930339 |
T |
|
| Q |
114 |
tgacatcgacgggggtagggtttaagtgttcgatctcttttttcaatgatgaaggcaatcgaggacaggttttcttccgttgattgtcggaagtcttctt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52930340 |
tgacatcgacgggggtagggtttaagtgttcgatctcttttttcaatgatgaaggcaatcgaggacaggttttcttccgttgattgtcggaagtcctctt |
52930439 |
T |
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| Q |
214 |
cgacttcttttttccggtgtgacggttggcgtcgcctctctcctttcgcttcttctc |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52930440 |
cgacttcttttttccggtgtgacggttggcgtcgcctctctcctttcgcttcttctc |
52930496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 44371695 - 44371950
Alignment:
| Q |
11 |
tcattattatcattgacagatacagggtcgtaacgtttattcttgctggactcttcctcgggtagttcttcttcgtattcgtaaacgtcgctgtcgattt |
110 |
Q |
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||||||| |||||| ||||| |||||||||||||| |||||||| ||||| ||||| || ||| |||||||||||||||||||||| ||||||||||| | |
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| T |
44371695 |
tcattatcatcattaacagaaacagggtcgtaacgcttattctttctggattcttcttcaggttgttcttcttcgtattcgtaaacatcgctgtcgatat |
44371794 |
T |
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| Q |
111 |
cattgacatcgacgggggtagggtttaagtgttcgatctcttttttcaatgatgaaggcaatcgaggacaggttttcttccgttgattgtcggaagtctt |
210 |
Q |
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||| |||||| || ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
44371795 |
catcgacatcaacaggggtagggtttaagtgttgaatctcttttttcaaagatgaaggcaaacgaggaccagttttcttccgttgattgtcggaagtctt |
44371894 |
T |
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| Q |
211 |
cttcgacttcttttttccggtgtgacggttggcgtcgcctctctcctttcgcttct |
266 |
Q |
| |
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|||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |
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| T |
44371895 |
cttcgacttcttttttgcggtgtggcggttagcgtcgcctctctcctttcgcttct |
44371950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 44380550 - 44380805
Alignment:
| Q |
11 |
tcattattatcattgacagatacagggtcgtaacgtttattcttgctggactcttcctcgggtagttcttcttcgtattcgtaaacgtcgctgtcgattt |
110 |
Q |
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||||||| |||||| ||||| |||||||||||||| |||||||| ||||| ||||| || ||| |||||||||||||||||||||| ||||||||||| | |
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| T |
44380550 |
tcattatcatcattaacagaaacagggtcgtaacgcttattctttctggattcttcttcaggttgttcttcttcgtattcgtaaacatcgctgtcgatat |
44380649 |
T |
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| Q |
111 |
cattgacatcgacgggggtagggtttaagtgttcgatctcttttttcaatgatgaaggcaatcgaggacaggttttcttccgttgattgtcggaagtctt |
210 |
Q |
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||| |||||| || ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
44380650 |
catcgacatcaacaggggtagggtttaagtgttgaatctcttttttcaaagatgaaggcaaacgaggaccagttttcttccgttgattgtcggaagtctt |
44380749 |
T |
|
| Q |
211 |
cttcgacttcttttttccggtgtgacggttggcgtcgcctctctcctttcgcttct |
266 |
Q |
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|||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |
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| T |
44380750 |
cttcgacttcttttttgcggtgtggcggttagcgtcgcctctctcctttcgcttct |
44380805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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