View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_29 (Length: 281)
Name: NF11382_low_29
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 14782408 - 14782154
Alignment:
| Q |
12 |
atgaagagagaaagtgaggaggtttttgacaagggaagtagggtttattgggtgacggttatggcgaatgtcgtgacgtggcagttttgttttatgggga |
111 |
Q |
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| T |
14782408 |
atgaagagagaaagtgaggaggtttttgacaagggaagtagggtttattgggtgacggttatggctaatgtcgtgacgtggcagttttgttttatgggga |
14782309 |
T |
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| Q |
112 |
ctgctgggatggtgtttttgacatcttcattaactggtgggatttgcatgacagcattgttgtctatgaatgtgttgggtggtgttatagtttatagaga |
211 |
Q |
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| T |
14782308 |
ctgctgggatggtgtttttgacatcttcattaactggtgggatttgcatgacagctttgttgtctatgaatgtgttgggtggtgttatagtttatagaga |
14782209 |
T |
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| Q |
212 |
tgcatttggtggtttgaaagctgtttcaactgttatgtgtatgtggggattttgt |
266 |
Q |
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| T |
14782208 |
tgcatttggtggtttgaaagctgtttcaactgttttgtgtatgtggggattttgt |
14782154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 14774536 - 14774281
Alignment:
| Q |
7 |
ctgagatgaagagagaaagtgaggaggtttttgacaagggaagtagggtttattgggtgacggttatggcgaatgtcgtgacgtggcagttttgttttat |
106 |
Q |
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| T |
14774536 |
ctgaaatgaagagagaaagtgaagaaatttttgataagggaagtttggtttattgggtgacagttatggctaatgtggtgacgtggcagttttgttttat |
14774437 |
T |
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| Q |
107 |
ggggactgctgggatggtgtttttgacatcttcattaactggtgggatttgcatgacagcattgttgtctatgaatgtgttgggtggtgttatagtttat |
206 |
Q |
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| T |
14774436 |
gggaactgctggaatggtgtttttgacatcttcattaactggtgggatttgtatgacagctttgttgtctatgaatgtgttgggaggtgttttggtgttt |
14774337 |
T |
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| Q |
207 |
agagatgcatttggtggtttgaaagctgtttcaactgttatgtgtatgtggggatt |
262 |
Q |
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| T |
14774336 |
agagatgcatttggtggtgttaaggctgtttcaactgttttgtgcatgtggggatt |
14774281 |
T |
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