View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_3 (Length: 685)
Name: NF11382_low_3
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Complemental strand, 41345430 - 41344762
Alignment:
| Q |
1 |
aagcaaaaagggaaaaacagcgtcgtccacgatatcgatcttctcgtagaccaagatccgaaatgggtaatatggtaatggaaacaactccattatcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41345430 |
aagcaaaaagggaaaaacagcgtcgtccacgatatcgatcttctcgtagaccaagatccgaaatgggtaatatgataatggaaacaactccattatcagt |
41345331 |
T |
|
| Q |
101 |
gaatgaaatagcaaccattgttccggaaacgagtattaatcctgaccagagtttgccaatagaaacagctccatcgtcaatgaacgaaacaagcaatgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41345330 |
gaatgaaatagcaaccattgttccggaaacgagtattaatcctgaccagagtttgccaatagaaacagctccatcatcaatgaacgaaacaagcaatgtt |
41345231 |
T |
|
| Q |
201 |
caacaaacaagtcataatcaggaacatgaaactccaagcgcaactgcggggaatgcatcaatgaatgtaacagatattgatgttccagaaataaataata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41345230 |
caacaaacaagtcataatcaggaacatgaaactccaagcgcaactgcggggaatgcatcaatgaatgtaacagatattgatgttccagaaataaataata |
41345131 |
T |
|
| Q |
301 |
atcaagaacatagtttgacgatggaaacaacttcatcatcaattcccgaaccattattgcgtcaaccaacaataaaacattatnnnnnnnccatcctagc |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
41345130 |
atcaggaacatagtttgacgatggaaacaacttcatcatcaattcccgaaccattaccgcgtcaaccaacaataaaacataataaaaaaaccatcctagc |
41345031 |
T |
|
| Q |
401 |
atggttgacagcttgcaaggaaattgatgaagggacccaggtgcgttaccatgatggggaaaaaccgataacaggtcgaattttcaatggagccatctta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41345030 |
atggttgacagcttgcaaggaaattgatgaagggacccaggtgcgttaccatgatggggaaaaaccgataacaggtcgaattttcaatggagccatctta |
41344931 |
T |
|
| Q |
501 |
tgtagctgttgcgacgaggaaatctctgtatggaagtttgagaagcatgctcaaagtgaggatatacaaccatacaaacgcattttggtggcgacacgga |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41344930 |
tgtagctgttgcgacgaggaaatctctgtatggaagtttgagaagcatgctcaaagtgaggatatacaaccatacaaacgcattttggtggcgacacgga |
41344831 |
T |
|
| Q |
601 |
agtccgtcctccaaaacatcctgattagtaagtggttgaaagaggatgaacaaaaacgtcgagacatgt |
669 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41344830 |
agtccgtcctccaaaacatcctgattagtaagtggttgaaagaggatgaacaaaaacgtcgagacatgt |
41344762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 579
Target Start/End: Original strand, 9994082 - 9994134
Alignment:
| Q |
527 |
tgtatggaagtttgagaagcatgctcaaagtgaggatatacaaccatacaaac |
579 |
Q |
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||||||||| ||||||| ||| | ||||||||||||||| |||||||| |||| |
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| T |
9994082 |
tgtatggaactttgagatgcacgttcaaagtgaggatatgcaaccatagaaac |
9994134 |
T |
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