View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11382_low_31 (Length: 270)
Name: NF11382_low_31
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_31 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0103 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 6050 - 6314
Alignment:
| Q |
1 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6050 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
6149 |
T |
|
| Q |
101 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6150 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaacttctttggaacactgaactgattc |
6249 |
T |
|
| Q |
201 |
catgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6250 |
catgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttggttct |
6314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 2633959 - 2633695
Alignment:
| Q |
1 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633959 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
2633860 |
T |
|
| Q |
101 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2633859 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaacttctttggaacactgaactgattc |
2633760 |
T |
|
| Q |
201 |
catgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2633759 |
catgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttggttct |
2633695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 66 - 267
Target Start/End: Complemental strand, 12083029 - 12082828
Alignment:
| Q |
66 |
gcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgaga |
165 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
12083029 |
gcttgatcattaagtaattttaagaatttggttgctgtttgtgttatttttgtttgctattgaatcatgattttgttatttccttttgaaaccagttaga |
12082930 |
T |
|
| Q |
166 |
tttttgctaacttctttggaatactgaactgattccatgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
265 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||||||| |||| ||||||||| ||| ||| ||||||| |||| |
|
|
| T |
12082929 |
tttttgctaacttctttggaatattgaactgatttcattaggtgcaggactcataaatatggctacgtgtgaaatttgaatgataataacctttggttct |
12082830 |
T |
|
| Q |
266 |
cc |
267 |
Q |
| |
|
|| |
|
|
| T |
12082829 |
cc |
12082828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12083779 - 12083707
Alignment:
| Q |
1 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatc |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
12083779 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatgaccatagatatcatttgcttgatc |
12083707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 871786 - 871919
Alignment:
| Q |
44 |
aagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgtta |
143 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||||||||||||| | ||||||||||||||||||| ||| |||| |||| | |||||||||||| |
|
|
| T |
871786 |
aagatggttatggatagcagttgcttgaacaccaagtaattttaaaactttggttgctgtttgtgttatttttctttgtcattggaacatgattttgttg |
871885 |
T |
|
| Q |
144 |
tttctttttgaaaccagtgagatttttgctaact |
177 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| |
|
|
| T |
871886 |
tttctttttgaaaccagtgagattattactaact |
871919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 12808625 - 12808889
Alignment:
| Q |
1 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808625 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
12808724 |
T |
|
| Q |
101 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808725 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttcttttttaaaccagtgagatttttgctaacttctttggaatactgaactgattc |
12808824 |
T |
|
| Q |
201 |
catgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
265 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12808825 |
catgaggtgtaggactcataaatatggttgcgtgcgaaatttgagtgacaatgacctttggttct |
12808889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 37433382 - 37433118
Alignment:
| Q |
1 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||| |||||| |
|
|
| T |
37433382 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatcattaaggaactttaagaatttggttgt |
37433283 |
T |
|
| Q |
101 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattc |
200 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37433282 |
tgtctgtgttatttttgtttgctattgaatcatgattttgttatttccttttgaaaccagttagatttttgctaacttctttggaatattgaactgattt |
37433183 |
T |
|
| Q |
201 |
catgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
265 |
Q |
| |
|
||| |||||||||| ||||||||||| || |||| ||||||||| ||||||| ||||||| |||| |
|
|
| T |
37433182 |
cattaggtgtaggaatcataaatatgtctacgtgtgaaatttgaatgacaataacctttggttct |
37433118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 276423 - 276290
Alignment:
| Q |
44 |
aagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgtta |
143 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||||||||||||| | ||||||||||||||||||| ||| |||| |||| | |||||||||||| |
|
|
| T |
276423 |
aagatggttatggatagcagttgcttgaacaccaagtaattttaaaactttggttgctgtttgtgttatttttctttgtcattggaacatgattttgttg |
276324 |
T |
|
| Q |
144 |
tttctttttgaaaccagtgagatttttgctaact |
177 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| |
|
|
| T |
276323 |
tttctttttgaaaccagtgagattattactaact |
276290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 21838154 - 21838416
Alignment:
| Q |
1 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| ||| ||||||| |
|
|
| T |
21838154 |
attataagtcatttgaatcagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatgat-aagtaatttta-gaatttggttgc |
21838251 |
T |
|
| Q |
101 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21838252 |
tgtttgtgttatttttgtttgctattgaatcatgattttgttatttccttttgaaaccagttagatttttgctaacttctttggaatattgaactgattt |
21838351 |
T |
|
| Q |
201 |
catgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
265 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||| |||| |
|
|
| T |
21838352 |
cattaggtgtaggactcataaatatggctacgtgttaaatttgaatgacaataacctttggttct |
21838416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 4807067 - 4806909
Alignment:
| Q |
1 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| |||| |||||| |
|
|
| T |
4807067 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatgattaagtaatttt-agaatttggttgt |
4806969 |
T |
|
| Q |
101 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccag |
160 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4806968 |
tgtttgtgttatttttgtttgctattgaatcatgattttgttatttccttttgaaaccag |
4806909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 32447481 - 32447217
Alignment:
| Q |
1 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| | |
|
|
| T |
32447481 |
attataagccatttgaattagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatcattaagtaattttaagaatttggttcc |
32447382 |
T |
|
| Q |
101 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
32447381 |
tgtttgtgttatttttgtttgctattgaatcatgattttgttatttccttttgaaatcagttagatttttgctaacttctttgaaatattgaactgattt |
32447282 |
T |
|
| Q |
201 |
catgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
265 |
Q |
| |
|
||| || ||||||||||| | ||| |||| | || |||||||| ||||||| ||||||| |||| |
|
|
| T |
32447281 |
cattagttgtaggactcaaagatacggctacatgttaaatttgattgacaataacctttggttct |
32447217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 27261295 - 27261031
Alignment:
| Q |
1 |
attataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgc |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| | |
|
|
| T |
27261295 |
attataagccatttgaattagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatcattaagtaattttaagaatttggttcc |
27261196 |
T |
|
| Q |
101 |
tgtttgtgttatatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtgagatttttgctaacttctttggaatactgaactgattc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
27261195 |
tgtttgtgttatttttgtttgctattgaatcatgattttgttatttccttttgaaatcagttagatttttgccaacttctttggaatattgaacttattt |
27261096 |
T |
|
| Q |
201 |
catgaggtgtaggactcataaatatggctgcgtgcgaaatttgagtgacaatgacctttgcttct |
265 |
Q |
| |
|
||| || ||||||||||| | ||| |||| | || |||||| | ||||||| ||||||| |||| |
|
|
| T |
27261095 |
cattagttgtaggactcaaagatacggctacatgttaaattttaatgacaataacctttggttct |
27261031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 4637817 - 4637665
Alignment:
| Q |
11 |
atttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgtt |
110 |
Q |
| |
|
|||||||| || |||| || || |||||| |||||||||||||| ||||||||||| |||||||| ||| |||||||| || ||||||||||||||||| |
|
|
| T |
4637817 |
atttgaattagagtttctggtctattgatcttaaagatggccattgatatcatttgtttgatcactaagaaattttaaaaatttggttgctgtttgtgtt |
4637718 |
T |
|
| Q |
111 |
atatttgtttgctattgaatcatgattttgttatttctttttgaaaccagtga |
163 |
Q |
| |
|
|| ||||||||||||| ||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
4637717 |
atttttgtttgctattcaatcatgattttggtattttttttttaaaccagtga |
4637665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 25127392 - 25127261
Alignment:
| Q |
44 |
aagatggccatggatatcatttgcttgatcaccaagtaattttaagaacctggttgctgtttgtgttatatttgtttgctattgaatcatgattttgtta |
143 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||||||||||||| | ||||||||||||||||||| ||| | | |||| | |||||||||||| |
|
|
| T |
25127392 |
aagatggttatggatagcagttgcttgaacaccaagtaattttaaaactttggttgctgtttgtgttatttttctgtc--attggaacatgattttgttg |
25127295 |
T |
|
| Q |
144 |
tttctttttgaaaccagtgagatttttgctaact |
177 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| |
|
|
| T |
25127294 |
tttctttttgaaaccagtgagattattactaact |
25127261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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