View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_32 (Length: 267)
Name: NF11382_low_32
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43376939 - 43376696
Alignment:
| Q |
1 |
acactatgaaacattagggttgtcccaatcaaatttgatggccttttctaaaaaatagtcatccttgtaagtaaggtaaaaagtcatattatgaaatttg |
100 |
Q |
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| T |
43376939 |
acactatgaaacattagggttgtcccaatcaaatttgatggccttttctaaaaaatagtcatccttgtaagtaaggtaaaaagtcatattatgaaatttg |
43376840 |
T |
|
| Q |
101 |
aggccccactactaaatctgaggccatgtgttgcgatagcacta----actacacatgcatagggccaaccctgtgaaacacggatatgaacactgacac |
196 |
Q |
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| T |
43376839 |
aagccccactactaaatctgaggccatgtgttgcaatagcactaactaactacacatgcatagggctaaccctgtgaaacacggatatgaacactgacac |
43376740 |
T |
|
| Q |
197 |
agatgataatttgagaaaataaattaattgatcgttattagatg |
240 |
Q |
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| T |
43376739 |
ggatgataatttgagaaaataaattaattgatagttattagatg |
43376696 |
T |
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Back To:
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 20980997 - 20980957
Alignment:
| Q |
187 |
acactgacacagatgataatttgagaaaataaattaattga |
227 |
Q |
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| T |
20980997 |
acaccgacatagatgataatttgagaaaatgaattaattga |
20980957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 32102912 - 32102884
Alignment:
| Q |
199 |
atgataatttgagaaaataaattaattga |
227 |
Q |
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| T |
32102912 |
atgataatttgagaaaataaattaattga |
32102884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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