View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_33 (Length: 263)
Name: NF11382_low_33
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 41987925 - 41988158
Alignment:
| Q |
18 |
gcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaaaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41987925 |
gcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaaaatc |
41988024 |
T |
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| Q |
118 |
atgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacataatgataaaccatactagtctctcttcccttctttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
41988025 |
atgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacctaatgataaaccatactagtctctcttccc----ttc |
41988120 |
T |
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| Q |
218 |
tttcttgtgaaccatcgtcaaaattctagtttcttctc |
255 |
Q |
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||||||||||||||||| ||||| |||||||||||||| |
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| T |
41988121 |
tttcttgtgaaccatcgccaaaactctagtttcttctc |
41988158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 1220588 - 1220355
Alignment:
| Q |
18 |
gcaagaaaagctacaaagtacaacacgtacgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaaaatc |
117 |
Q |
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||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1220588 |
gcaagaatagctacaaagtacaacacatatgaaaaatcaaagaacagaaaagttagcaacaacattttttctttcaccactctcttatgaggaaaaaatc |
1220489 |
T |
|
| Q |
118 |
atgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcacataatgataaaccatactagtctctcttcccttctttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1220488 |
atgtggaatggatcccaccaaacaggtaatgaaagcaaaaataaatcataaatgaagttcatcgaatgataaaccatactagtctctcttcccttctt-- |
1220391 |
T |
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| Q |
218 |
tttcttgtgaaccatcgtcaaaattctagtttcttctc |
255 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||| |
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| T |
1220390 |
--tcttgtgaaccatcgtcaaaactctaatttcttctc |
1220355 |
T |
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