View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_35 (Length: 250)
Name: NF11382_low_35
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 45705438 - 45705666
Alignment:
| Q |
14 |
agagagagaaggacggtgtattgaggatgatgtggtgttgagcctgaatcattctgttcatgtggacttgaaatcagagccgtttgattcaaggaagggt |
113 |
Q |
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| T |
45705438 |
agagagagaaggacggtgtattgaggatgatgtggtgttgagcctgaatcattctgttcatgtggacttgaaatcagagccgtttgattcaaggaagggt |
45705537 |
T |
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| Q |
114 |
gaaaagaggaaaatgatgcggctaaatcagtgctatagagcaaatcagagtgtttgcaattgacatacgaagttgta--------ggaacacgttaggct |
205 |
Q |
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| T |
45705538 |
gaaaagaggaaaatgatgcggctaaatcagtgctatagagcaaatcagagtgtttgcaattgacatacgaagttgtatcagatagggaaaacgttaggct |
45705637 |
T |
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| Q |
206 |
aagttaggggtagtggatgacgtacacac |
234 |
Q |
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| T |
45705638 |
aagtaaggggtagtggatgacgtacacac |
45705666 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 43557936 - 43557878
Alignment:
| Q |
34 |
ttgaggatgatgtggtgttgagcctgaatcattctgttcatgtggacttgaaatcagag |
92 |
Q |
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| T |
43557936 |
ttgaggatgatgtggtgttgagcctgaatcaaccggttcaagtggacgtgaaatcagag |
43557878 |
T |
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