View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11382_low_39 (Length: 247)

Name: NF11382_low_39
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11382_low_39
NF11382_low_39
[»] chr5 (20 HSPs)
chr5 (131-235)||(41988341-41988445)
chr5 (1-63)||(41988211-41988273)
chr5 (1-48)||(15710569-15710616)
chr5 (1-48)||(5378329-5378376)
chr5 (1-44)||(9034992-9035035)
chr5 (2-48)||(6647953-6647999)
chr5 (1-47)||(28618631-28618677)
chr5 (4-48)||(32390687-32390731)
chr5 (1-48)||(6074776-6074823)
chr5 (9-48)||(13079173-13079212)
chr5 (1-48)||(19646081-19646128)
chr5 (1-48)||(41358066-41358113)
chr5 (6-48)||(4726968-4727010)
chr5 (6-48)||(28500749-28500791)
chr5 (132-205)||(8957396-8957469)
chr5 (170-203)||(32309392-32309425)
chr5 (4-48)||(2415430-2415474)
chr5 (12-48)||(13007723-13007759)
chr5 (4-48)||(41063436-41063480)
chr5 (161-205)||(41358248-41358292)
[»] chr3 (26 HSPs)
chr3 (1-63)||(1220240-1220302)
chr3 (1-48)||(29182648-29182695)
chr3 (1-48)||(34767006-34767053)
chr3 (3-48)||(14741365-14741410)
chr3 (131-184)||(1220122-1220172)
chr3 (1-48)||(20201098-20201145)
chr3 (1-48)||(20203280-20203327)
chr3 (1-48)||(25374110-25374157)
chr3 (1-48)||(43839558-43839605)
chr3 (1-47)||(50519817-50519863)
chr3 (132-205)||(4019788-4019861)
chr3 (4-48)||(20251682-20251726)
chr3 (132-204)||(50519973-50520045)
chr3 (138-206)||(51742008-51742076)
chr3 (1-48)||(1165436-1165483)
chr3 (1-48)||(21803557-21803604)
chr3 (138-197)||(32089789-32089848)
chr3 (1-48)||(35501799-35501846)
chr3 (159-206)||(38379607-38379654)
chr3 (132-206)||(41882260-41882334)
chr3 (1-47)||(41882449-41882495)
chr3 (132-205)||(28995160-28995233)
chr3 (3-48)||(28995346-28995391)
chr3 (161-206)||(31628800-31628845)
chr3 (132-204)||(25939331-25939403)
chr3 (1-29)||(29776747-29776775)
[»] chr2 (20 HSPs)
chr2 (132-197)||(25237190-25237255)
chr2 (132-203)||(25622897-25622968)
chr2 (159-205)||(11580988-11581034)
chr2 (4-48)||(19953600-19953644)
chr2 (1-48)||(7640396-7640443)
chr2 (6-48)||(25623085-25623127)
chr2 (1-47)||(27191376-27191422)
chr2 (1-47)||(27841190-27841236)
chr2 (1-48)||(3603012-3603059)
chr2 (1-48)||(5930450-5930497)
chr2 (1-48)||(6089920-6089967)
chr2 (1-48)||(13268601-13268647)
chr2 (1-48)||(37883680-37883727)
chr2 (132-203)||(37883843-37883914)
chr2 (1-48)||(41841977-41842024)
chr2 (132-206)||(3465119-3465193)
chr2 (1-47)||(25516521-25516567)
chr2 (1-47)||(29812656-29812702)
chr2 (1-47)||(43566902-43566948)
chr2 (3-44)||(42105796-42105837)
[»] chr8 (17 HSPs)
chr8 (1-48)||(9270048-9270095)
chr8 (1-48)||(9992692-9992739)
chr8 (1-48)||(36545821-36545868)
chr8 (159-205)||(16938128-16938174)
chr8 (158-197)||(5989846-5989885)
chr8 (6-48)||(16938311-16938353)
chr8 (3-48)||(5989659-5989704)
chr8 (4-48)||(15237677-15237721)
chr8 (1-48)||(8054848-8054895)
chr8 (159-202)||(10633050-10633093)
chr8 (1-48)||(31874111-31874158)
chr8 (159-205)||(6219962-6220008)
chr8 (2-48)||(41996573-41996619)
chr8 (132-193)||(12244079-12244140)
chr8 (7-48)||(14919432-14919472)
chr8 (132-205)||(23766930-23767003)
chr8 (1-48)||(5327993-5328041)
[»] chr7 (20 HSPs)
chr7 (1-48)||(25855260-25855307)
chr7 (1-48)||(37399653-37399700)
chr7 (1-48)||(44681488-44681535)
chr7 (1-48)||(47749761-47749808)
chr7 (1-47)||(8611663-8611709)
chr7 (1-47)||(24470422-24470468)
chr7 (1-47)||(24475370-24475416)
chr7 (132-205)||(9934033-9934106)
chr7 (4-48)||(22751469-22751513)
chr7 (1-48)||(7985919-7985966)
chr7 (1-48)||(9933874-9933921)
chr7 (1-48)||(13008713-13008760)
chr7 (1-48)||(30992863-30992910)
chr7 (159-206)||(39990032-39990079)
chr7 (1-48)||(42490729-42490776)
chr7 (138-205)||(45949530-45949597)
chr7 (132-178)||(19895562-19895608)
chr7 (1-47)||(49166954-49167000)
chr7 (138-203)||(36350364-36350429)
chr7 (4-48)||(135185-135229)
[»] chr6 (12 HSPs)
chr6 (1-48)||(20845035-20845082)
chr6 (1-48)||(23843464-23843511)
chr6 (1-48)||(1944123-1944170)
chr6 (1-48)||(15128189-15128236)
chr6 (1-48)||(19759815-19759862)
chr6 (1-48)||(548905-548952)
chr6 (159-205)||(8978598-8978644)
chr6 (132-197)||(20496383-20496448)
chr6 (132-205)||(23843275-23843348)
chr6 (159-207)||(8508345-8508393)
chr6 (161-205)||(8644464-8644508)
chr6 (4-48)||(13234148-13234192)
[»] scaffold0157 (1 HSPs)
scaffold0157 (4-48)||(1181-1225)
[»] chr4 (25 HSPs)
chr4 (4-48)||(12519686-12519730)
chr4 (1-48)||(23067888-23067935)
chr4 (159-202)||(31994245-31994288)
chr4 (1-48)||(37869457-37869504)
chr4 (1-48)||(38434625-38434672)
chr4 (132-205)||(34115507-34115580)
chr4 (2-47)||(53903638-53903683)
chr4 (4-48)||(16991902-16991946)
chr4 (4-48)||(28990328-28990372)
chr4 (1-48)||(1645981-1646028)
chr4 (9-48)||(2945172-2945211)
chr4 (4-47)||(9549497-9549540)
chr4 (1-48)||(9661880-9661927)
chr4 (1-48)||(11817099-11817146)
chr4 (163-206)||(18995507-18995550)
chr4 (159-202)||(31932479-31932522)
chr4 (1-48)||(41486602-41486649)
chr4 (6-48)||(9526379-9526421)
chr4 (1-30)||(28588588-28588617)
chr4 (3-48)||(46716934-46716979)
chr4 (2-47)||(54420753-54420798)
chr4 (138-178)||(3169622-3169662)
chr4 (4-48)||(9474579-9474623)
chr4 (4-48)||(31601399-31601443)
chr4 (3-47)||(46386814-46386858)
[»] chr1 (28 HSPs)
chr1 (4-48)||(8893323-8893367)
chr1 (4-48)||(15698230-15698274)
chr1 (1-48)||(5832260-5832307)
chr1 (1-48)||(14717283-14717330)
chr1 (1-48)||(21326500-21326547)
chr1 (1-48)||(44562789-44562836)
chr1 (2-48)||(10877374-10877420)
chr1 (4-46)||(29067080-29067122)
chr1 (1-48)||(40992361-40992410)
chr1 (3-48)||(45659071-45659116)
chr1 (4-48)||(630825-630869)
chr1 (8-48)||(15276490-15276530)
chr1 (1-48)||(17579795-17579842)
chr1 (1-48)||(23257115-23257162)
chr1 (1-48)||(23320467-23320514)
chr1 (159-206)||(31609959-31610006)
chr1 (159-206)||(50107770-50107817)
chr1 (2-48)||(1767994-1768040)
chr1 (1-47)||(4564545-4564591)
chr1 (2-48)||(6212926-6212972)
chr1 (132-205)||(4564706-4564779)
chr1 (3-48)||(12148088-12148133)
chr1 (132-205)||(34659492-34659565)
chr1 (3-48)||(35077930-35077975)
chr1 (132-205)||(37684941-37685014)
chr1 (132-205)||(37700503-37700576)
chr1 (132-205)||(44513853-44513926)
chr1 (159-203)||(28082355-28082399)
[»] scaffold0202 (1 HSPs)
scaffold0202 (159-206)||(22483-22530)
[»] scaffold0340 (2 HSPs)
scaffold0340 (132-206)||(11626-11700)
scaffold0340 (4-48)||(11817-11861)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-48)||(244663-244710)
[»] scaffold0045 (2 HSPs)
scaffold0045 (2-48)||(9688-9734)
scaffold0045 (141-205)||(9509-9573)
[»] scaffold0316 (1 HSPs)
scaffold0316 (3-48)||(12243-12288)
[»] scaffold1294 (1 HSPs)
scaffold1294 (3-43)||(809-849)
[»] scaffold0024 (1 HSPs)
scaffold0024 (4-48)||(36559-36603)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 41988341 - 41988445
Alignment:
Q  131 tttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatccatgttatgagtttgttcgcatattc 230  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41988341 tttcaggttgtcatatcagcttcaatgcagtgcagattcaatcaatgatttttgcgtcgtcaacgttacagatccatgttatgagtttgttcgcatattc 41988440  T
Q  231 atctc 235  Q
    |||||    
T  41988441 atctc 41988445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41988211 - 41988273
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattttgttgtcttagtgcga 63  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  41988211 ccctctaactcgtttttctctttcccttttgttgaaataagtgattttgtcgtcttagtgcga 41988273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15710569 - 15710616
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  15710569 ccctctaactcgtttttctctttcccttttattgaaataagtgatttt 15710616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5378329 - 5378376
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  5378329 ccctctaactcgtttttctatttcccttttattgaaataagtgatttt 5378376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9035035 - 9034992
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtga 44  Q
    ||||||||||||||||||||||||| |||| |||||||||||||    
T  9035035 ccctctaactcgtttttctctttccattttattaaaataagtga 9034992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 6647999 - 6647953
Alignment:
Q  2 cctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||||    
T  6647999 cctctaactcgtttttcgctttcccttttattgaaataagtgatttt 6647953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28618631 - 28618677
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||    
T  28618631 ccctctaactcgtttttctatttcccttttattgaaataagtgattt 28618677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 32390731 - 32390687
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||| |||| || ||||||||||||||    
T  32390731 tctaactcgtttttctctttcctttttattgaaataagtgatttt 32390687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6074823 - 6074776
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||| ||||||||||| ||||||||| || ||||||||||||||    
T  6074823 ccctctaaatcgtttttctccttcccttttatttaaataagtgatttt 6074776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 13079173 - 13079212
Alignment:
Q  9 ctcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  13079173 ctcgtttttctctttcccttttattgaaataagtgatttt 13079212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19646128 - 19646081
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||| ||||||||||||||||||  | ||||||||||||||    
T  19646128 ccctctaactcatttttctctttcccttttaatgaaataagtgatttt 19646081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41358066 - 41358113
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||| |||||| || |||||||| |||||    
T  41358066 ccctctaactcgtttttctcttttccttttattgaaataagttatttt 41358113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 4727010 - 4726968
Alignment:
Q  6 taactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||| |||||||||| || ||||||||||||||    
T  4727010 taactcgtttttctatttcccttttattgaaataagtgatttt 4726968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 28500749 - 28500791
Alignment:
Q  6 taactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||| |||||||||||||||||| || ||||||||||||||    
T  28500749 taactcttttttctctttcccttttattgaaataagtgatttt 28500791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 8957396 - 8957469
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| ||||||||  || || ||||||||||| |||||| ||||| ||| |||||||| |||||||    
T  8957396 ttcagattgtcagatcagcttcgatccaatgcagattcaaccaatgacttttgcgtcatcaacgttgcagatcc 8957469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 32309392 - 32309425
Alignment:
Q  170 aatcaatgatttttgtgtcgtcaacgttacagat 203  Q
    ||||||||| ||||||||||||||||||||||||    
T  32309392 aatcaatgacttttgtgtcgtcaacgttacagat 32309425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 2415430 - 2415474
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||| |||||||| |||||||||| || ||||||||||||||    
T  2415430 tctaacttgtttttctttttcccttttattgaaataagtgatttt 2415474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 13007723 - 13007759
Alignment:
Q  12 gtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| || ||||||||||||||    
T  13007723 gtttttctctttcccttttattgaaataagtgatttt 13007759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 41063480 - 41063436
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||| |||| || |||||| |||||||    
T  41063480 tctaactcgtttttctctttccattttattgaaataaatgatttt 41063436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 41358248 - 41358292
Alignment:
Q  161 tgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    |||||||||||||||||| |||   ||||||||||||||||||||    
T  41358248 tgcagattcaatcaatgactttgacgtcgtcaacgttacagatcc 41358292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1220302 - 1220240
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattttgttgtcttagtgcga 63  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  1220302 ccctctaactcgtttttctctttcccttttgttgaaataagtgattttgtcgtcttagtgcga 1220240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 29182695 - 29182648
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  29182695 ccctctaactcgtttttctctttcccttttattgaaataagtgatttt 29182648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34767006 - 34767053
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  34767006 ccctctaactcgtttttctctttcccttttattgaaataagtgatttt 34767053  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 14741410 - 14741365
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||| || ||||||||||||||    
T  14741410 ctctaactcgtttttctctttcccttttattgaaataagtgatttt 14741365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 1220172 - 1220122
Alignment:
Q  131 tttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttg 184  Q
    |||||||||||||||||||||||   ||||| ||||||||||||||||||||||    
T  1220172 tttcaggttgtcatatcagcttt---gcagtacagattcaatcaatgatttttg 1220122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20201145 - 20201098
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||    
T  20201145 ccctctaactcgtttttctctttcacttttattgaaataagtgatttt 20201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20203327 - 20203280
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||| ||||| || ||||||||||||||    
T  20203327 ccctctaactcgtttttctctttcacttttattgaaataagtgatttt 20203280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25374157 - 25374110
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||    
T  25374157 ccctctaactcgtttttctcttttccttttcttgaaataagtgatttt 25374110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43839605 - 43839558
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||| ||||||||||||||||| || ||||||||||||||    
T  43839605 ccctctaactcgcttttctctttcccttttattgaaataagtgatttt 43839558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50519817 - 50519863
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||    
T  50519817 ccctctaactcgtttttctatttcccttttattgaaataagtgattt 50519863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 4019788 - 4019861
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| ||||||||  || |||||||||| |||||||||| ||| | |||||||||||| |||||||    
T  4019788 ttcagattgtcagatcagcttagatccagtgcagatccaatcaatgactttggcgtcgtcaacgttgcagatcc 4019861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 20251682 - 20251726
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||  || ||||||||||||||    
T  20251682 tctaactcgtttttctctttccctttgattgaaataagtgatttt 20251726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 50519973 - 50520045
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatc 204  Q
    ||||| |||||| ||||||||  || ||||||||||||||||||||||||| | ||| || ||||| ||||||    
T  50519973 ttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgattttggcgtcatccacgttgcagatc 50520045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 51742008 - 51742076
Alignment:
Q  138 ttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    |||||||||||| |||||| || || | || |||| ||||||||| |||||||||||||| ||||||||    
T  51742008 ttgtcatatcagttttaatccaatgtaaatccaattaatgattttagtgtcgtcaacgttgcagatcca 51742076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1165483 - 1165436
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||| |||||||| |||||||||| || ||||||||||||||    
T  1165483 ccctctaacttgtttttctttttcccttttattgaaataagtgatttt 1165436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21803557 - 21803604
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||| ||||| || ||| ||||||||||    
T  21803557 ccctctaactcgtttttctctttctcttttattgaaacaagtgatttt 21803604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 32089848 - 32089789
Alignment:
Q  138 ttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgtt 197  Q
    |||||||||||||||  || |||||||||| ||||||||||||||   ||||||||||||    
T  32089848 ttgtcatatcagcttcgatccagtgcagatccaatcaatgattttgacgtcgtcaacgtt 32089789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 35501846 - 35501799
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||||||  | |||||| |||||||    
T  35501846 ccctctaactcgtttttctctttcccttttactgaaataaatgatttt 35501799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 38379654 - 38379607
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    |||||||||||||||||||||||||| ||||| |||||| | ||||||    
T  38379654 agtgcagattcaatcaatgatttttgcgtcgttaacgttgctgatcca 38379607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 41882334 - 41882260
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    ||||| |||||| |||||||| ||| ||||||||||| ||||||||| ||| | ||| || ||||| ||||||||    
T  41882334 ttcagattgtcagatcagcttcaatccagtgcagatttaatcaatgactttggcgtcatccacgttgcagatcca 41882260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41882495 - 41882449
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| |||||||| | || |||||||||||||    
T  41882495 ccctctaactcgtttttctatttcccttgtattgaaataagtgattt 41882449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 28995233 - 28995160
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||||||||||||  || |||||||||| |||||||||| ||| | ||| || ||||| |||||||    
T  28995233 ttcagattgtcatatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatcc 28995160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 28995391 - 28995346
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||| |||||||||||| |||||||||| || ||||||||||||||    
T  28995391 ctcttactcgtttttctatttcccttttattgaaataagtgatttt 28995346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 31628845 - 31628800
Alignment:
Q  161 tgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    ||||||| ||||||||| |||||||||||||||||||  |||||||    
T  31628845 tgcagatccaatcaatggtttttgtgtcgtcaacgttgtagatcca 31628800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 25939403 - 25939331
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatc 204  Q
    ||||| |||| | ||||||||  || |||||||||| |||||||||| ||| | || ||||||||||||||||    
T  25939403 ttcagattgttagatcagcttagattcagtgcagatccaatcaatgactttggcgtagtcaacgttacagatc 25939331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29776775 - 29776747
Alignment:
Q  1 ccctctaactcgtttttctctttcccttt 29  Q
    |||||||||||||||||||||||||||||    
T  29776775 ccctctaactcgtttttctctttcccttt 29776747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 25237255 - 25237190
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgtt 197  Q
    ||||||||| || |||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||    
T  25237255 ttcaggttgccagatcagcttcaatccagtgcagattcaatcaatgacttttgagtcgtcaacgtt 25237190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 25622968 - 25622897
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagat 203  Q
    ||||| |||||||||||||||  || ||||||||||||||||||||| |||   ||||||||||||||||||    
T  25622968 ttcagattgtcatatcagcttagattcagtgcagattcaatcaatgactttgacgtcgtcaacgttacagat 25622897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 11581034 - 11580988
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||    
T  11581034 agtgcaaattcaatcaatgatttttgtgtcgtcaacgttgcagatcc 11580988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 19953600 - 19953644
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  19953600 tctaactcgtttttctctttcccttttattgaaataagtgatttt 19953644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7640443 - 7640396
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  7640443 ccctctaactcgtttttctatttcccttttattgaaataagtgatttt 7640396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 25623127 - 25623085
Alignment:
Q  6 taactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  25623127 taactcgtttttctctttcccttttattgaaataagtgatttt 25623085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27191422 - 27191376
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||    
T  27191422 ccctctaactcgtttttctatttcccttttattgaaataagtgattt 27191376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 27841236 - 27841190
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||    
T  27841236 ccctctaactcgtttttctatttcccttttattgaaataagtgattt 27841190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3603012 - 3603059
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||| |||||||||||| |||||| || ||||||||||||||    
T  3603012 ccctctaacttgtttttctcttttccttttcttgaaataagtgatttt 3603059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5930450 - 5930497
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| ||  |||||||||||||    
T  5930450 ccctctaactcgtttttctgtttcccttttatttcaataagtgatttt 5930497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6089920 - 6089967
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||| |||||||||| |||||||||| || ||||||||||||||    
T  6089920 ccctctaattcgtttttctatttcccttttattgaaataagtgatttt 6089967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13268601 - 13268647
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||||||    
T  13268601 ccctctaactcgtttt-ctcttgcccttttgttgaaataagtgatttt 13268647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37883680 - 37883727
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||| |||||||||| ||||| |||| |||||||||||||||||    
T  37883680 ccctctaattcgtttttctatttcctttttattaaaataagtgatttt 37883727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 37883843 - 37883914
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagat 203  Q
    ||||| |||||||||||||||| || || |||||||  ||||||||| ||| | |||||||||||| |||||    
T  37883843 ttcagattgtcatatcagctttgatccaatgcagatcaaatcaatgactttggagtcgtcaacgttgcagat 37883914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41841977 - 41842024
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||| ||||||||||||||||||||||||| || ||||||| ||||||    
T  41841977 ccctttaactcgtttttctctttcccttttattgaaataagcgatttt 41842024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 3465119 - 3465193
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    ||||| |||||| ||||||||  || |||||||||| |||||||||||||| | ||| || ||||| ||||||||    
T  3465119 ttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgattttggcgtcatccacgttgcagatcca 3465193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25516521 - 25516567
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||| ||||||| |||||||||| || |||||||||||||    
T  25516521 ccctctaactcatttttctatttcccttttattgaaataagtgattt 25516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29812702 - 29812656
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||| ||||||||||| |||||| || |||||||||||||    
T  29812702 ccctctaactcatttttctctttaccttttattgaaataagtgattt 29812656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 43566902 - 43566948
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| ||||| |||| || |||||||||||||    
T  43566902 ccctctaactcgtttttctatttcctttttattgaaataagtgattt 43566948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 42105837 - 42105796
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtga 44  Q
    ||||||||||||||||| |||||||||| || ||||||||||    
T  42105837 ctctaactcgtttttctatttcccttttattgaaataagtga 42105796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9270048 - 9270095
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  9270048 ccctctaactcgtttttctctttcccttttattgaaataagtgatttt 9270095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9992692 - 9992739
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  9992692 ccctctaactcgtttttctctttcccttttattgaaataagtgatttt 9992739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36545868 - 36545821
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  36545868 ccctctaactcgtttttctctttcccttttattgaaataagtgatttt 36545821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 16938174 - 16938128
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||    
T  16938174 agtgcagattcaatcaatgacttttgtgtcgtcaacgttgcagatcc 16938128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 5989846 - 5989885
Alignment:
Q  158 cagtgcagattcaatcaatgatttttgtgtcgtcaacgtt 197  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  5989846 cagtgcagattcaatcaatgacttttgtgtcgtcaacgtt 5989885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 16938353 - 16938311
Alignment:
Q  6 taactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  16938353 taacttgtttttctctttcccttttgttgaaataagtgatttt 16938311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 5989659 - 5989704
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||||  | ||||||||||||||    
T  5989659 ctctaactcgtttttctctttccctttttatgaaataagtgatttt 5989704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 15237721 - 15237677
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||| || || |||||||||||    
T  15237721 tctaactcgtttttctctttcccttttattgaagtaagtgatttt 15237677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8054895 - 8054848
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||| | || ||||||||||||||    
T  8054895 ccctctaactcgtttttctatttcccttatattgaaataagtgatttt 8054848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 10633093 - 10633050
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacaga 202  Q
    |||| ||||||||||||||||||||| |||||||||||| ||||    
T  10633093 agtgtagattcaatcaatgatttttgcgtcgtcaacgttgcaga 10633050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31874111 - 31874158
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||  |||||||||| || ||||||||||||||    
T  31874111 ccctctaactcgtttttccttttcccttttattgaaataagtgatttt 31874158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 6220008 - 6219962
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    |||||||||||||||||||||||| | ||| |||||||| |||||||    
T  6220008 agtgcagattcaatcaatgattttggcgtcttcaacgttgcagatcc 6219962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 41996573 - 41996619
Alignment:
Q  2 cctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||| | |||||||||| || ||||||||||||||    
T  41996573 cctctaactcgtttttgtatttcccttttattgaaataagtgatttt 41996619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 12244140 - 12244079
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaa 193  Q
    ||||| |||||||||||||||| || || ||||||| |||||||||| |||  |||||||||    
T  12244140 ttcagattgtcatatcagctttgatccaatgcagatccaatcaatgactttgatgtcgtcaa 12244079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 14919472 - 14919432
Alignment:
Q  7 aactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  14919472 aactcgttttt-tctttcccttttgttaaaataagtaatttt 14919432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 23766930 - 23767003
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| ||||||||  || ||||| ||||| ||||||||| ||| | |||||||||||| |||||||    
T  23766930 ttcagattgtcagatcagcttcgatccagtgtagattaaatcaatgactttggagtcgtcaacgttgcagatcc 23767003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5327993 - 5328041
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgtt-aaaataagtgatttt 48  Q
    ||||||||||| ||||||||||||||| || || |||||||||||||||    
T  5327993 ccctctaactcatttttctctttccctattattgaaaataagtgatttt 5328041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25855307 - 25855260
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  25855307 ccctctaactcgtttttctctttcccttttattgaaataagtgatttt 25855260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37399653 - 37399700
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||    
T  37399653 ccctctaactcgtttttctctttcccttttattgaaataaatgatttt 37399700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44681488 - 44681535
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  44681488 ccctctaactcgtttttctttttcccttttattgaaataagtgatttt 44681535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 47749761 - 47749808
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||| |||||||||||||||||||||| || ||||||||||||||    
T  47749761 ccctctatctcgtttttctctttcccttttattgaaataagtgatttt 47749808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8611709 - 8611663
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||    
T  8611709 ccctctaactcgtttttctatttcccttttattgaaataagtgattt 8611663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24470422 - 24470468
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||    
T  24470422 ccctctaactcgtttttctatttcccttttattgaaataagtgattt 24470468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 24475370 - 24475416
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| |||||||||| || |||||||||||||    
T  24475370 ccctctaactcgtttttctatttcccttttattgaaataagtgattt 24475416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 9934033 - 9934106
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| ||||||||| || ||||||||||  ||||||||| ||| | |||||||||||| |||||||    
T  9934033 ttcagattgtcagatcagctttgatccagtgcagatcaaatcaatgactttggagtcgtcaacgttgcagatcc 9934106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 22751469 - 22751513
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||| || |||||||||| |||||||||||||||||    
T  22751469 tctaactcgttttactatttcccttttattaaaataagtgatttt 22751513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7985919 - 7985966
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||| | || |||||| |||||||    
T  7985919 ccctctaactcgtttttctctttcccttctattgaaataaatgatttt 7985966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9933874 - 9933921
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||| || ||||| |||||||||| |||||||||||||||||    
T  9933874 ccctctaactagtatttctatttcccttttattaaaataagtgatttt 9933921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13008760 - 13008713
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||| ||||||||||||| ||||| || ||||||||||||||    
T  13008760 ccctctaactagtttttctctttctcttttattgaaataagtgatttt 13008713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30992910 - 30992863
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||| |||||||| |||||||||| || ||||||||||||||    
T  30992910 ccctctaacttgtttttctatttcccttttattgaaataagtgatttt 30992863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 39990079 - 39990032
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    |||||||||||||||||||| ||||| |||||||||||| || |||||    
T  39990079 agtgcagattcaatcaatgaattttgcgtcgtcaacgttgcaaatcca 39990032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42490729 - 42490776
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| |  ||||||||||||||    
T  42490729 ccctctaactcgtttttctttttcccttttatcgaaataagtgatttt 42490776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 45949597 - 45949530
Alignment:
Q  138 ttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    |||||||||||||||  ||  ||||||||| |||||||||| ||| | |||||||||||| |||||||    
T  45949597 ttgtcatatcagcttcgatcaagtgcagatccaatcaatgactttggcgtcgtcaacgttgcagatcc 45949530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 19895608 - 19895562
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatga 178  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||    
T  19895608 ttcagattgtcatatcagcttcgatccagtgcagattcaatcaatga 19895562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49166954 - 49167000
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    |||||||||| |||||||| |||||||||| || |||||||||||||    
T  49166954 ccctctaacttgtttttctatttcccttttattgaaataagtgattt 49167000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 36350364 - 36350429
Alignment:
Q  138 ttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagat 203  Q
    |||||||||||||||| || |||||| ||| |||||||||  ||| | |||||||||||| |||||    
T  36350364 ttgtcatatcagctttgattcagtgcggatccaatcaatggctttggcgtcgtcaacgttgcagat 36350429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 135229 - 135185
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||| |||||||||||||||||| || ||||| ||||||||    
T  135229 tctaactcatttttctctttcccttttattgaaataggtgatttt 135185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 20845035 - 20845082
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||    
T  20845035 ccctctaactcgtttttctctttcccttttattgaaataagtgatttt 20845082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23843511 - 23843464
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  23843511 ccctctaactcgtttttctatttcccttttattaaaataagtgatttt 23843464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1944123 - 1944170
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||| || || ||||||||||||||    
T  1944123 ccctctaactcgtttttctctttccctcttattgaaataagtgatttt 1944170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15128236 - 15128189
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||| | || ||||||||||||||    
T  15128236 ccctctaactcgtttttctctttcccttgtattgaaataagtgatttt 15128189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19759815 - 19759862
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  19759815 ccctctaactcgtttttctatttcccttttattgaaataagtgatttt 19759862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 548952 - 548905
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||| ||||||    
T  548952 ccctctaactcgtttttctttttcccttttattgaaataagcgatttt 548905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 8978644 - 8978598
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    |||||| |||||||||||||||||||  ||||||||||| |||||||    
T  8978644 agtgcatattcaatcaatgatttttgcatcgtcaacgttgcagatcc 8978598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 20496383 - 20496448
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgtt 197  Q
    ||||| |||||| ||||||||  || ||||||| || |||||||||| ||| ||||||||||||||    
T  20496383 ttcagattgtcagatcagcttagatccagtgcaaatccaatcaatgactttggtgtcgtcaacgtt 20496448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 23843348 - 23843275
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| ||||||||  || ||||||||||||||||||||| ||| | ||| || ||||| |||||||    
T  23843348 ttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgactttggcgtcatccacgttgcagatcc 23843275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 8508345 - 8508393
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatccat 207  Q
    |||||||||| ||||||||| ||||| |||||||||||| |||| ||||    
T  8508345 agtgcagattgaatcaatgacttttgcgtcgtcaacgttgcagacccat 8508393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 8644464 - 8644508
Alignment:
Q  161 tgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    |||||||||||||||||| ||| | ||||||||||||| ||||||    
T  8644464 tgcagattcaatcaatgactttggcgtcgtcaacgttatagatcc 8644508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 13234192 - 13234148
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||| |||||||||| |||||||||| || ||||||||||||||    
T  13234192 tctaattcgtttttctttttcccttttattgaaataagtgatttt 13234148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 1225 - 1181
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  1225 tctaactcgtttttctctttcccttttattgaaataagtgatttt 1181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 12519686 - 12519730
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  12519686 tctaactcgtttttctctttcccttttattgaaataagtgatttt 12519730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23067935 - 23067888
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  23067935 ccctctaactcgtttttctatttcccttttattgaaataagtgatttt 23067888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 31994245 - 31994288
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacaga 202  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  31994245 agtgcagattcaatcaatgatttttgtgccgtcaacgttgcaga 31994288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37869504 - 37869457
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||||    
T  37869504 ccctctaactcgtttttatctttcccttttattgaaataagtgatttt 37869457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38434625 - 38434672
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  38434625 ccctctaactcgtttttctatttctcttttattaaaataagtgatttt 38434672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 34115580 - 34115507
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| |||||||| ||| ||||| |||| |||||||||||||| | ||| |||||||| |||||||    
T  34115580 ttcagattgtcagatcagcttcaatccagtgtagatccaatcaatgattttggcgtcatcaacgttgcagatcc 34115507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 53903638 - 53903683
Alignment:
Q  2 cctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    |||||||||||||||||| |||||||||| || |||||||||||||    
T  53903638 cctctaactcgtttttctatttcccttttattgaaataagtgattt 53903683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 16991902 - 16991946
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||| |||||||||| || ||||||||||||||    
T  16991902 tctaactcgtttttctatttcccttttattgaaataagtgatttt 16991946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 28990328 - 28990372
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||    
T  28990328 tctaactcgtttttctctttctcttttattgaaataagtgatttt 28990372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1646028 - 1645981
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||| ||||| || |||||| |||||||    
T  1646028 ccctctaactcgtttttctctttctcttttattgaaataaatgatttt 1645981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 2945172 - 2945211
Alignment:
Q  9 ctcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  2945172 ctcgtttttctctttcccttttattgaaataagtgatttt 2945211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 9549497 - 9549540
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    |||||||||||||||||||| |||||| || |||||||||||||    
T  9549497 tctaactcgtttttctcttttccttttattgaaataagtgattt 9549540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 9661880 - 9661927
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||| |||||||| |||||||||| || ||||||||||||||    
T  9661880 ccctctaacttgtttttctttttcccttttattgaaataagtgatttt 9661927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11817099 - 11817146
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||  ||||||||||| |||||||||||| ||||||||||||||    
T  11817099 ccctctacatcgtttttctccttcccttttgtttaaataagtgatttt 11817146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 18995507 - 18995550
Alignment:
Q  163 cagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||    
T  18995507 cagattcaatcaatgacttttgcgtcgtcaacgttgcagatcca 18995550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 31932479 - 31932522
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacaga 202  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||    
T  31932479 agtgtagattcaatcaatgaattttgtgtcatcaacgttacaga 31932522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41486602 - 41486649
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||| | || ||||||| ||||||    
T  41486602 ccctctaactcgtttttctctttcccttatattgaaataagagatttt 41486649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 9526421 - 9526379
Alignment:
Q  6 taactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||  || ||||||||||||||    
T  9526421 taactcgtttttctctttccctttgattgaaataagtgatttt 9526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 28588588 - 28588617
Alignment:
Q  1 ccctctaactcgtttttctctttccctttt 30  Q
    ||||||||||||||||||||||||||||||    
T  28588588 ccctctaactcgtttttctctttccctttt 28588617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 46716979 - 46716934
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||| ||| |||||| || ||||||||||||||    
T  46716979 ctctaactcgtttttctattttccttttattgaaataagtgatttt 46716934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 54420798 - 54420753
Alignment:
Q  2 cctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    |||||||||||||||||| ||| |||||| || |||||||||||||    
T  54420798 cctctaactcgtttttctattttccttttattgaaataagtgattt 54420753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 3169622 - 3169662
Alignment:
Q  138 ttgtcatatcagctttaatgcagtgcagattcaatcaatga 178  Q
    |||||| |||||||| ||| |||||||||||||||||||||    
T  3169622 ttgtcagatcagcttcaatccagtgcagattcaatcaatga 3169662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 9474623 - 9474579
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||| ||||||||||||| |||| || ||||||||||||||    
T  9474623 tctaactcatttttctctttcctttttattgaaataagtgatttt 9474579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 31601443 - 31601399
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||| || |||||||||| || ||||||||||||||    
T  31601443 tctaactcgttttgctatttcccttttattgaaataagtgatttt 31601399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 46386858 - 46386814
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    |||||||| ||||||||||||||||||| || |||||| ||||||    
T  46386858 ctctaacttgtttttctctttcccttttattgaaataaatgattt 46386814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 8893323 - 8893367
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  8893323 tctaactcgtttttctctttcccttttattgaaataagtgatttt 8893367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 15698230 - 15698274
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  15698230 tctaactcgtttttctctttcccttttattgaaataagtgatttt 15698274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5832260 - 5832307
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  5832260 ccctctaactcgtttttctatttcccttttattgaaataagtgatttt 5832307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 14717330 - 14717283
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  14717330 ccctctaactcgtttttctttttcccttttattgaaataagtgatttt 14717283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21326500 - 21326547
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  21326500 ccctctaactcgtttttctatttcccttttattgaaataagtgatttt 21326547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44562836 - 44562789
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || ||||||||||||||    
T  44562836 ccctctaactcgtttttctatttcccttttattgaaataagtgatttt 44562789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 10877374 - 10877420
Alignment:
Q  2 cctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||||    
T  10877374 cctctaactcgtttttctctttcccttttattgaaaaaagtgatttt 10877420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 29067080 - 29067122
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatt 46  Q
    ||||||||||||||||||||||||||| || ||||||||||||    
T  29067080 tctaactcgtttttctctttcccttttattgaaataagtgatt 29067122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40992361 - 40992410
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgtt--aaaataagtgatttt 48  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  40992361 ccctctaactcgtttttctctttcccttttattgaaaaataagtgatttt 40992410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 45659071 - 45659116
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||    
T  45659071 ctctaactcgtttttctctttaccttttattgaaataagtgatttt 45659116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 630869 - 630825
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||| |||||||||| || ||||||||||||||    
T  630869 tctaactcgtttttctatttcccttttattgaaataagtgatttt 630825  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 15276530 - 15276490
Alignment:
Q  8 actcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  15276530 actcgtttttctctttcccttttattgaaataagtgatttt 15276490  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17579795 - 17579842
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||| |||||||||||||||||  || ||||||||||||||    
T  17579795 ccctctaactcatttttctctttccctttaattgaaataagtgatttt 17579842  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23257115 - 23257162
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||| ||||||||||| ||||||||||| || ||||||||||||||    
T  23257115 ccctctcactcgtttttccctttcccttttattgaaataagtgatttt 23257162  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23320467 - 23320514
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||| |||||||||| || |||||||| |||||    
T  23320467 ccctctaactcgtttttctatttcccttttattgaaataagtcatttt 23320514  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 31609959 - 31610006
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    |||||||||||||||||||||||| | || ||||||||| ||||||||    
T  31609959 agtgcagattcaatcaatgattttggcgttgtcaacgttgcagatcca 31610006  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 50107817 - 50107770
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    |||||| ||||||||||||| ||||||||||||||| || ||||||||    
T  50107817 agtgcaaattcaatcaatgacttttgtgtcgtcaacattgcagatcca 50107770  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 1767994 - 1768040
Alignment:
Q  2 cctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||| ||||||||||||||||||||| || |||||| |||||||    
T  1767994 cctctaattcgtttttctctttcccttttattgaaataaatgatttt 1768040  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4564545 - 4564591
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgattt 47  Q
    ||||||||||||||||||| |||| ||||| || |||||||||||||    
T  4564545 ccctctaactcgtttttctatttctcttttattgaaataagtgattt 4564591  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 6212972 - 6212926
Alignment:
Q  2 cctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||  |||||||||| || ||||||||||||||    
T  6212972 cctctaactcgtttttccttttcccttttattgaaataagtgatttt 6212926  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 4564706 - 4564779
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| ||||||||  || ||||||||||||||||||||| ||| ||||| || || || |||||||    
T  4564706 ttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgactttggtgtcatccacattgcagatcc 4564779  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 12148133 - 12148088
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||| ||||| |||| || ||||||||||||||    
T  12148133 ctctaactcgtttttctatttcctttttattcaaataagtgatttt 12148088  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 34659565 - 34659492
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||||||||||||  || || ||||||| |||||||||| ||| | ||||||||| || |||||||    
T  34659565 ttcagattgtcatatcagcttagatccaatgcagatccaatcaatgactttggcgtcgtcaacattgcagatcc 34659492  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 35077975 - 35077930
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||  |||| || ||||||||||||||    
T  35077975 ctctaactcgtttttctctttcatttttattgaaataagtgatttt 35077930  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 37685014 - 37684941
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| ||||||||  || ||||||||||| ||| ||||| ||| | |||||||||||| |||||||    
T  37685014 ttcagattgtcagatcagcttcgatccagtgcagattaaattaatgactttggagtcgtcaacgttgcagatcc 37684941  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 37700503 - 37700576
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| ||||||||  || ||||||||||| ||| ||||| ||| | |||||||||||| |||||||    
T  37700503 ttcagattgtcagatcagcttcgatccagtgcagattaaattaatgactttggagtcgtcaacgttgcagatcc 37700576  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 44513926 - 44513853
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||| |||||| ||||||||  || ||||||||||  ||||||||| ||| | |||||||||||| |||||||    
T  44513926 ttcagattgtcagatcagcttcgatccagtgcagatcaaatcaatgactttggagtcgtcaacgttgcagatcc 44513853  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 28082355 - 28082399
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagat 203  Q
    |||||| ||||||||||||| |||||||| ||||||||| |||||    
T  28082355 agtgcatattcaatcaatgacttttgtgttgtcaacgttgcagat 28082399  T

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Target: scaffold0202 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 22530 - 22483
Alignment:
Q  159 agtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    ||||||||||||||||| || ||||||||| |||||||||||||||||    
T  22530 agtgcagattcaatcaacgacttttgtgtcatcaacgttacagatcca 22483  T

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Target: scaffold0340 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 11700 - 11626
Alignment:
Q  132 ttcaggttgtcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcca 206  Q
    ||||| |||||| ||||||||  || ||||||||||  ||||||||||||| | |||||||||||| ||||||||    
T  11700 ttcagattgtcaaatcagcttcgatccagtgcagatcaaatcaatgattttggagtcgtcaacgttgcagatcca 11626  T

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Target: scaffold0340; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 11861 - 11817
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||| |||||||||| || ||||||||||||||    
T  11861 tctaactcgtttttctatttcccttttattgaaataagtgatttt 11817  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 244663 - 244710
Alignment:
Q  1 ccctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||||||||||||||||||||| | |||| || ||||||||||||||    
T  244663 ccctctaactcgtttttctcttttctttttattgaaataagtgatttt 244710  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 9734 - 9688
Alignment:
Q  2 cctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||||| |||||||||| || || |||||||||||    
T  9734 cctctaactcgtttttctatttcccttttattgaattaagtgatttt 9688  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 9573 - 9509
Alignment:
Q  141 tcatatcagctttaatgcagtgcagattcaatcaatgatttttgtgtcgtcaacgttacagatcc 205  Q
    ||||||||||||  || ||||||||||||||||||||| ||| | ||| || ||||| |||||||    
T  9573 tcatatcagcttcgatccagtgcagattcaatcaatgactttggcgtcatccacgttgcagatcc 9509  T

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Target: scaffold0316 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 12288 - 12243
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    ||||| |||||| ||||||||||||||| || ||||||||||||||    
T  12288 ctctagctcgttcttctctttcccttttattgaaataagtgatttt 12243  T

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Target: scaffold1294 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 809 - 849
Alignment:
Q  3 ctctaactcgtttttctctttcccttttgttaaaataagtg 43  Q
    |||||||||||||| ||||||||||||| || |||||||||    
T  809 ctctaactcgttttcctctttcccttttattgaaataagtg 849  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 36559 - 36603
Alignment:
Q  4 tctaactcgtttttctctttcccttttgttaaaataagtgatttt 48  Q
    |||||||||||||||  |||||||||| || ||||||||||||||    
T  36559 tctaactcgtttttccttttcccttttattgaaataagtgatttt 36603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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