View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_40 (Length: 247)
Name: NF11382_low_40
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 32092831 - 32093062
Alignment:
| Q |
1 |
tcgtcgattccatcaagagaaatgattggaatctcgttgctgaagttgttgtaagcaacttttggacgctcatcttcttcgcgaacaaaactggattcga |
100 |
Q |
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| T |
32092831 |
tcgtcgattccatcaagagaaatgattggaatctcgttgctgaagttgttgtaagcaacttttggacgctcatcttcttcgcgaacaaaactggattcga |
32092930 |
T |
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| Q |
101 |
gggtcttttcttgagcaagataggtgagagtttgagctggtgccattgtttgcaaggaaggttgctgtgttttggaagagatactcaaataaatagagtg |
200 |
Q |
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| T |
32092931 |
gggtcttttcttgagcaagataggtgagagtttgagctggtgccattgtttgcaaggaagattgctgtgttttggaagagatagtcaaataaatagagtg |
32093030 |
T |
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| Q |
201 |
atgactttgaaggatggatggtaagagaatgg |
232 |
Q |
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| T |
32093031 |
atgactttgaaggatggatggtaagagaatgg |
32093062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 32069817 - 32069967
Alignment:
| Q |
1 |
tcgtcgattccatcaagagaaatgattggaatctcgttgctgaagttgttgtaagcaacttttggacgctcatcttcttcgcgaacaaaactggattcga |
100 |
Q |
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||||||||||| | |||||||||||||||||||| |||||||| || ||||| |||||||||||||||||| | | || |||| ||||| || |||| |
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| T |
32069817 |
tcgtcgattccggcgagagaaatgattggaatctcattgctgaaattattgtatgcaacttttggacgctcacttacatctcgaatgaaactagactcga |
32069916 |
T |
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| Q |
101 |
gggtcttttcttgagcaagataggtgagagtttgagctggtgccattgttt |
151 |
Q |
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| T |
32069917 |
gggtcttttcttgagctagatatttaagagttttcactggtgccattgttt |
32069967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8623605 - 8623529
Alignment:
| Q |
1 |
tcgtcgattccatcaagagaaatgattggaatctcgttgctgaagttgttgtaagcaacttttggacgctcatcttc |
77 |
Q |
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|||||||||||| ||| ||||| | |||||||||||||||||| | ||||||||||||||||||||| |||||||| |
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| T |
8623605 |
tcgtcgattccagcaattgaaattactggaatctcgttgctgaattggttgtaagcaacttttggacgttcatcttc |
8623529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23311175 - 23311242
Alignment:
| Q |
1 |
tcgtcgattccatcaagagaaatgattggaatctcgttgctgaagttgttgtaagcaacttttggacg |
68 |
Q |
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||||||||||| | |||||||| ||||||||||| |||||||| | |||||||||||||||||||| |
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| T |
23311175 |
tcgtcgattcctgcgagagaaataattggaatctcattgctgaactgattgtaagcaacttttggacg |
23311242 |
T |
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