View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_41 (Length: 247)
Name: NF11382_low_41
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 32092855 - 32092639
Alignment:
| Q |
1 |
tcatttctcttgatggaatcgacgacgtcggtggccgtagggcagagatatgtaacaagattgtagaagcttgtgaaaactggggtatctttcaagttgt |
100 |
Q |
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| T |
32092855 |
tcatttctcttgatggaatcgacgacgctggtggccgtagggcagagatatgcaacaagattgtagaagcttgtgaaaactggggtatctttcaagttgt |
32092756 |
T |
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| Q |
101 |
tgatcatggtttggactcaaagcttatttctgagatgactcgttttgctaaagggttctttgatttgccgccagaagagaagctccggtttgacatgtct |
200 |
Q |
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| T |
32092755 |
tgatcatggtgtggattcaaagcttatttctgagatgactcgttttgctaaagggttctttgatttgccgccagaagagaagctccggtttgacatgtct |
32092656 |
T |
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| Q |
201 |
ggtggtaaaaagggtgg |
217 |
Q |
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||||||||||||||||| |
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| T |
32092655 |
ggtggtaaaaagggtgg |
32092639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 32069841 - 32069625
Alignment:
| Q |
1 |
tcatttctcttgatggaatcgacgacgtcggtggccgtagggcagagatatgtaacaagattgtagaagcttgtgaaaactggggtatctttcaagttgt |
100 |
Q |
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| T |
32069841 |
tcatttctctcgccggaatcgacgatgtcgatggcctcagaatagagacttgcaacaagattgtggaggcttgcgagaactggggtatcttccaaattgt |
32069742 |
T |
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| Q |
101 |
tgatcatggtttggactcaaagcttatttctgagatgactcgttttgctaaagggttctttgatttgccgccagaagagaagctccggtttgacatgtct |
200 |
Q |
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| T |
32069741 |
tgatcatggtgtagatcaaaagctcatttctgagatgacccgtttggctaaagggttctttgatttgccaccggaggagaagcttcggtttgacctctcc |
32069642 |
T |
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| Q |
201 |
ggtggtaaaaagggtgg |
217 |
Q |
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| T |
32069641 |
ggtggtaaaaagggtgg |
32069625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 23311185 - 23310983
Alignment:
| Q |
15 |
ggaatcgacgacgtcggtggccgtagggcagagatatgtaacaagattgtagaagcttgtgaaaactggggtatctttcaagttgttgatcatggtttgg |
114 |
Q |
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|||||||||||| | |||||||| || | ||| || || ||| |||||| | ||||||| || |||||||||||||| ||||||||||||||||| ||| |
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| T |
23311185 |
ggaatcgacgacattggtggccgcagagtagaaatttgcaaccagattgcaaaagcttgcgagaactggggtatcttccaagttgttgatcatggcgtgg |
23311086 |
T |
|
| Q |
115 |
actcaaagcttatttctgagatgactcgttttgctaaagggttctttgatttgccgccagaagagaagctccggtttgacatgtctggtggtaaaaaggg |
214 |
Q |
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| T |
23311085 |
atcaaaagctcatttctgagatgaccagtttttctaaagggttctttgatttgccaccagaagagaagcttcagtttgacatgtctgatggtaaaaaggg |
23310986 |
T |
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| Q |
215 |
tgg |
217 |
Q |
| |
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||| |
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| T |
23310985 |
tgg |
23310983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 8623594 - 8623690
Alignment:
| Q |
14 |
tggaatcgacgacgtcggtggccgtagggcagagatatgtaacaagattgtagaagcttgtgaaaactggggtatctttcaagttgttgatcatggt |
110 |
Q |
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|||||||||||| || ||| ||||| | ||||||||| || |||||||| || ||||| || | |||||||| |||||| |||||||||||||| |
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| T |
8623594 |
tggaatcgacgaggtgaatggacgtagagaagagatatgcaagaagattgttgaggcttgcgaggaatggggtatttttcaaattgttgatcatggt |
8623690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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