View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11382_low_43 (Length: 245)
Name: NF11382_low_43
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 49871455 - 49871673
Alignment:
| Q |
16 |
caacatactccttatagataccagccttaacatgaataacaaaaggaactttgttcttcttgggaacagttgcaagtgcctcagtcaaagtcttaaattg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49871455 |
caacatactccttatagataccagccttaacatgaataacaaaaggaactttgttcttcttgggaacagttgcaagtgcctcagtcaaagtcttaaattg |
49871554 |
T |
|
| Q |
116 |
accactaccatcttgtgcaacaacaatgttaggcttaacgttctgaggagccgcaagaagtttcctttgactttgagaaacccatgatggcaaaccatct |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49871555 |
accactaccatcttgtgcaacaacaacgttaggcttaacgttctgaggagccgcaagaagtttcctttgactttgagaaacccatgatggtaaaccatct |
49871654 |
T |
|
| Q |
216 |
tcagacaaaagcttcctat |
234 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
49871655 |
tcagacaaaagcttcctat |
49871673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 49865525 - 49865742
Alignment:
| Q |
17 |
aacatactccttatagataccagccttaacatgaataacaaaaggaactttgttcttcttgggaacagttgcaagtgcctcagtcaaagtcttaaattga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
49865525 |
aacatactccttatagataccagccttaacatgaataacaaaaggaacttggtttttcttgggaactagtgcaagtgcctcagtcaatgtcttaaattga |
49865624 |
T |
|
| Q |
117 |
ccactaccatcttgtgcaacaacaatgttaggcttaacgttctgaggagccgcaagaagtttcctttgactttgagaaacccatgatggcaaaccatctt |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49865625 |
ccactaccatcttgtgcaacaacagcattaggcttaacgttctcaggagccgcgagaagtttcctttggctttgagaaacccatgatggcaaaccatctt |
49865724 |
T |
|
| Q |
217 |
cagacaaaagcttcctat |
234 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
49865725 |
cagacaaatgcttcctat |
49865742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University