View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_46 (Length: 239)
Name: NF11382_low_46
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31685777 - 31685553
Alignment:
| Q |
1 |
tgttagaagttgaacatatagtttatagatcgttcagagaactctgagagcactttgtgcttgatctttgatgtatgagttctcactaattacaatgtgc |
100 |
Q |
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| T |
31685777 |
tgttagaagttgaacatatagtttatagatcgttcagagaactctgagagcactttgtgcttgatctttgatgtatgagttctcactaattacaatgtgc |
31685678 |
T |
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| Q |
101 |
atcgatcctatttatagattgctagaaatctaactagctgtaactaactccgagaagttactctatctggtcactgttataagcaaagattccttgttca |
200 |
Q |
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| T |
31685677 |
atcgatcctatttatagattgctagaaatctaactagctgtaactaactccgagaagttactctatctggtcactgttataagcaaagattccttgttca |
31685578 |
T |
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| Q |
201 |
gattcattcaatatctgatgtatct |
225 |
Q |
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| T |
31685577 |
gattcattcaatatctgatgtatct |
31685553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 136
Target Start/End: Original strand, 6743034 - 6743166
Alignment:
| Q |
4 |
tagaagttgaacatatagtttatagatcgttcagagaactctgagagcactttgtgcttgatctttgatgtatgagttctcactaattacaatgtgcatc |
103 |
Q |
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| T |
6743034 |
tagaagttgaacatgtagttcatagattattgggagaacttaaagagcactttgtggttgatctttgatttatgaattcccaattattacaatgagcact |
6743133 |
T |
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| Q |
104 |
gatcctatttatagattgctagaaatctaacta |
136 |
Q |
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| T |
6743134 |
gatcctatttatagattgctagaactccaacta |
6743166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 23292367 - 23292427
Alignment:
| Q |
166 |
tctggtcactgttataagcaaagattccttgttcagattcattcaatatctgatgtatctg |
226 |
Q |
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| T |
23292367 |
tctggtcacatttataagcaaatattcctttttcagattcattgaatatctgatgtatctg |
23292427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 34223125 - 34223054
Alignment:
| Q |
89 |
attacaatgtgcatcgatcctatttatagattgctagaaatctaactagctgtaactaactccgagaagtta |
160 |
Q |
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| T |
34223125 |
attacaatgtgcattgatcctatttatagattgctaaagctttaactacctgtaactaactccaagaggtta |
34223054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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