View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11382_low_49 (Length: 235)
Name: NF11382_low_49
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_49 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 40455692 - 40455894
Alignment:
| Q |
17 |
acatcatgatgctgcacttcactttcattccccccttgaagtgtagaatcaatatnnnnnnntttatcttcatgaaacgttacatccatagaaataaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40455692 |
acatcatgatgctgcacttcactttcattccccc-ttgaagtgtagaatcaacataaaaaaatttatcttcatgaaacgttacatccatagaaataaaaa |
40455790 |
T |
|
| Q |
117 |
atctttttgatgttggatggtaagcacgataacctttttgagttgatccatacccaacaaagacgcatttaatggctcgtttatcaagttttgaacgttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40455791 |
atctttttgatgttggatggtaagcacgataacctttttgagttgatccatacccaacaaagacgcatttaatggctcgtttatcaagttttgaacgttg |
40455890 |
T |
|
| Q |
217 |
atgt |
220 |
Q |
| |
|
|||| |
|
|
| T |
40455891 |
atgt |
40455894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 56391713 - 56391914
Alignment:
| Q |
19 |
atcatgatgctgcacttcactttcattccccccttgaagtgtagaatcaatatnnnnnnntttatcttcatgaaacgttacatccatagaaataaaaaat |
118 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||| ||||||||||| || |||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
56391713 |
atcatgatattgcacttcattttcattccccccctgaactgtagaatcaacataaaaacaattatcttcatgaaatgtcacatccatagaaatataaaat |
56391812 |
T |
|
| Q |
119 |
ctttttgatgttggatggtaagcacgataacctttttgagttgatccatacccaacaaagacgcatttaatggctcgtttatcaagttttgaacgttgat |
218 |
Q |
| |
|
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| |||| |||||||| |
|
|
| T |
56391813 |
ttctttgatgtgggatggtaagcaagataacctttttgagttgatccatacccaacaaagacacatttaacagctcgttcttcaaactttgtacgttgat |
56391912 |
T |
|
| Q |
219 |
gt |
220 |
Q |
| |
|
|| |
|
|
| T |
56391913 |
gt |
56391914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 27515954 - 27516155
Alignment:
| Q |
19 |
atcatgatgctgcacttcactttcattccccccttgaagtgtagaatcaatatnnnnnnntttatcttcatgaaacgttacatccatagaaataaaaaat |
118 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||| ||||||||||| || |||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
27515954 |
atcatgatattgcacttcattttcattccccccctgaactgtagaatcaacataaaaacaattatcttcatgaaatgtcacatccatagaaatataaaat |
27516053 |
T |
|
| Q |
119 |
ctttttgatgttggatggtaagcacgataacctttttgagttgatccatacccaacaaagacgcatttaatggctcgtttatcaagttttgaacgttgat |
218 |
Q |
| |
|
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| |||| |||||||| |
|
|
| T |
27516054 |
ttctttgatgtgggatggtaagcaagataacctttttgagttgatccatacccaacaaagacacatttaacagctcgttcttcaaactttgtacgttgat |
27516153 |
T |
|
| Q |
219 |
gt |
220 |
Q |
| |
|
|| |
|
|
| T |
27516154 |
gt |
27516155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 39743746 - 39743611
Alignment:
| Q |
19 |
atcatgatgctgcacttcactttcattccccccttgaagtgtagaatcaatatnnnnnnntttatcttcatgaaacgttacatccatagaaataaaaaat |
118 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| ||||| ||||||| | || |||||||||||||| || ||||||||||||||| ||||| |
|
|
| T |
39743746 |
atcatgatattgcacttcattttcattcccccct-gaagtctagaatcgacataaaaaaaattatcttcatgaaatgtcacatccatagaaatataaaat |
39743648 |
T |
|
| Q |
119 |
ctttttgatgttggatggtaagcacgataaccttttt |
155 |
Q |
| |
|
| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
39743647 |
ttctttgatgtgggatggtaagcaagataaccttttt |
39743611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University