View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_5 (Length: 561)
Name: NF11382_low_5
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 184 - 549
Target Start/End: Complemental strand, 50394967 - 50394603
Alignment:
| Q |
184 |
ttataaattaaaacaaagacttgaacttggcattgaccaacgacgtgcatgtaatgtaagtaaaggaacagatctgcattaaactatagtataacaatgg |
283 |
Q |
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| T |
50394967 |
ttataaattaaaacaaagacttgaacttggcattgaccaacgatgtgcatgtcatgtaagtaaaggaacagatctgcattaaactatagtataacaatgc |
50394868 |
T |
|
| Q |
284 |
aatcaaataagaaaatgaaaattatacatcacgggaaagaaaaattagcacacataatgttacatattatactgtataatatgtatgacagcattttaaa |
383 |
Q |
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| T |
50394867 |
aatcaaataaaaaaatgaaaattatacatcacgggaaagaaaaattagcacacataatgttacatattatactgtataatatgtatgacaacattttaaa |
50394768 |
T |
|
| Q |
384 |
tttcatgtttacacttaattatgaatctatgatctataataattaatatcatccttatcaacttgtcttaaaaactaagttgtcaccacatgctgccgtt |
483 |
Q |
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| T |
50394767 |
tttcatgtttacacttaattatgaatctatgatctat-ataattaatatcatccttatccacttgtcttaaaaactaagttgtcaccacatgctgccgtt |
50394669 |
T |
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| Q |
484 |
gaccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcatctc |
549 |
Q |
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| T |
50394668 |
gaccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttctc |
50394603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 50399482 - 50399315
Alignment:
| Q |
17 |
atagatgtctttgttttatttgcacaaccaatacattacaattacatgggttctttcaaacatgtttggagcacagcctcaaacaatctcaaacaaatat |
116 |
Q |
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| T |
50399482 |
atagatgtctttgttttatttgcacaaccaatacattacaattacatgggttctttcaaacatgtttggagcacagcctcaaacaatcttaaacaaatat |
50399383 |
T |
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| Q |
117 |
gtcatgttcactgttgcaagcattgaccaaagcttatttttaattaaaagctaaatgaaaatgaatat |
184 |
Q |
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| T |
50399382 |
gtcatgttcactgttgcaagcattgaccaaagcttatttttaattaaaagctaaatgaaaatgaatat |
50399315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 292 - 544
Target Start/End: Complemental strand, 50386428 - 50386189
Alignment:
| Q |
292 |
aagaaaatgaaaattatacatcacgggaaagaaaaattagcacacataatgttacatattatactgtataatatgtatgacagcattttaaatttcatgt |
391 |
Q |
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| T |
50386428 |
aagaaaatgacaagtatacatcactacaaagaaaaacaaacacacataaagctaca-attatactttataatatgtatgacaa-attttaaatttcatgt |
50386331 |
T |
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| Q |
392 |
ttacacttaattatgaatctatgatctataataattaatatcatccttatcaacttgtcttaaaaactaagttgtcaccacatgctgccgttgaccaatt |
491 |
Q |
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| T |
50386330 |
ttacactta--tatga-tctatgatctataata-------tcgtccttaaccatttgtcctaattcc-aagttgtcgcaacatgctgctgttgaccaact |
50386242 |
T |
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| Q |
492 |
ttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttc |
544 |
Q |
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| T |
50386241 |
ttgtcatcttcctctgtcttttctacgttctttacctccaccatttcagcttc |
50386189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 486 - 549
Target Start/End: Complemental strand, 50391392 - 50391329
Alignment:
| Q |
486 |
ccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcatctc |
549 |
Q |
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| T |
50391392 |
ccaactttgtcaccttcttctgtctttcccacgttctttacctccaccatttcagcttcttctc |
50391329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 50386756 - 50386720
Alignment:
| Q |
237 |
atgtaagtaaaggaacagatctgcattaaactatagt |
273 |
Q |
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| T |
50386756 |
atgtaagtaaaggagcaaatctgcattaaactatagt |
50386720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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