View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11382_low_50 (Length: 233)
Name: NF11382_low_50
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_50 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4819498 - 4819721
Alignment:
| Q |
1 |
acggatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagac |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4819498 |
acggatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttactacatcatcaagac |
4819597 |
T |
|
| Q |
99 |
cgggctcatagataggaagttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatgg----attaatgcaat |
194 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4819598 |
cggactcatagataggaacttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatggacatattaatgcaat |
4819697 |
T |
|
| Q |
195 |
gactgccattgctggaccaccaat |
218 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4819698 |
gactgccattgctggaccaccaat |
4819721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 10779297 - 10779477
Alignment:
| Q |
5 |
atacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccggg |
102 |
Q |
| |
|
||||| |||| |||| | |||| ||||||||||||||||| | | |||||||||||| | |||||| |||||||| |||||||| | ||||||| | |
|
|
| T |
10779297 |
atacaaacacaattttagcttcatagacatgtttttcaacatcagtgctgaagaaaagg-tcttgctgcgacattactttactacataatcaagattttg |
10779395 |
T |
|
| Q |
103 |
ctcatagataggaagttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatgga |
184 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || || ||||| |||||||||||| |
|
|
| T |
10779396 |
ctcatagataggaagttgattgttgttccacactgcaatgcgcgatttcgagatatcgaccactgctacgtcaatggatgga |
10779477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 4829301 - 4829482
Alignment:
| Q |
4 |
gatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccgg |
101 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||| ||||| ||| | | ||||||||||| | ||||||| ||| |||||||| ||| ||||||||||| | |
|
|
| T |
4829301 |
gatacaaacactatgtcagcttcgtagacatattttttaacatcatagctgaagaaaa-gttcttgccacgaaattgctttgctacatcatcaagaccag |
4829399 |
T |
|
| Q |
102 |
gctcatagataggaagttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgacagctacttcaatggatgga |
184 |
Q |
| |
|
|||| ||||| |||||||||| ||||| ||||| |||||| | | ||| | ||||||| ||||| ||||||||| |||||||| |
|
|
| T |
4829400 |
gctcgtagatgggaagttgatggttgttccacagtgcaatgctcaattacaagatatcgacgactgctacttcagtggatgga |
4829482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 4803905 - 4804060
Alignment:
| Q |
5 |
atacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta--tcatcaagaccggg |
102 |
Q |
| |
|
||||| |||| || ||| |||| ||||||||||||||||| | | || |||||| || | ||||| |||||||||||||||| ||||||| ||| || |
|
|
| T |
4803905 |
atacaaacacaatgtcagcttcatagacatgtttttcaacatcagtgttgaagacaaggtacttgcatcgacattgctttactacatcatcaatacctgg |
4804004 |
T |
|
| Q |
103 |
ctcatagataggaagttgattgttgtgccacactgcaatacgcgatttcgagatat |
158 |
Q |
| |
|
|||||||||||||||||||||| | | | | ||||||| | |||||||||||||| |
|
|
| T |
4804005 |
ctcatagataggaagttgattgctattcaaggctgcaatgcacgatttcgagatat |
4804060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 4798069 - 4797949
Alignment:
| Q |
4 |
gatacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttact--atcatcaagaccgg |
101 |
Q |
| |
|
|||||| ||||| | ||| |||| | ||||||||||| ||| | | |||||||||||| | ||||||||||| ||||||||||| |||||||||||| | |
|
|
| T |
4798069 |
gatacaaacactgtgtcagcttcatggacatgttttttaacatcagtgctgaagaaaaggttcttgccgcgatattgctttactacatcatcaagacctg |
4797970 |
T |
|
| Q |
102 |
gctcatagataggaagttgat |
122 |
Q |
| |
|
| |||||||| | |||||||| |
|
|
| T |
4797969 |
gttcatagatggcaagttgat |
4797949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 4824479 - 4824574
Alignment:
| Q |
72 |
gcgacattgctttactat--catcaagaccgggctcatagataggaagttgattgttgtgccacactgcaatacgcgatttcgagatatcaacgac |
165 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||| ||||||||||| ||||| ||||| ||| || |||| |||||||| | |||||||||||| |
|
|
| T |
4824479 |
gcgacattgctttactaaaccatcaaaacctggctgatagataggaatttgatcgttgtaccatgctacaatgcgcgattttgtgatatcaacgac |
4824574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 4835691 - 4835791
Alignment:
| Q |
31 |
acatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta---------tcatcaagaccgggctcatagataggaagttga |
121 |
Q |
| |
|
|||||||||| || | |||||||||||||| | |||| | ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
4835691 |
acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatcattcatcaagatcgggctcatagataggaagttga |
4835790 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
4835791 |
t |
4835791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 18937598 - 18937667
Alignment:
| Q |
19 |
tcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttacta |
88 |
Q |
| |
|
||||||||||||| ||| |||||||| | |||||| ||||||| | | |||||| |||||| |||||||| |
|
|
| T |
18937598 |
tcaacttcgtagaaatgcttttcaacatcaatgctaaagaaaaggtttttgccgtgacattactttacta |
18937667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University