View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_51 (Length: 231)
Name: NF11382_low_51
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_51 |
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| [»] scaffold1337 (1 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 30578569 - 30578369
Alignment:
| Q |
18 |
ttattgacttcaacaccaatgacccgcttagtcacattgcagacacgactggtacgacc-tggtagaatttgtgcggcatacctttgtgcacagctccgt |
116 |
Q |
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| T |
30578569 |
ttattgacttcaacaccaatggcacgcttagtcacattccagacacgaccggtacgaccgtggtagaatttgtgcggcatacctttgtgcacagctccgt |
30578470 |
T |
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| Q |
117 |
taactctaatatcgacatagtcgccgatatgataggtcctgaggtaggtggctaaggctattgttcccttcttgcggaagggacgagagaatgaatctct |
216 |
Q |
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| T |
30578469 |
taactctaatatcgacatagtcgccgatatgataggtcctgaggtaggtggctaaggctattgttcccttcttgcggaagggacgagagaatgaatctct |
30578370 |
T |
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| Q |
217 |
g |
217 |
Q |
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| T |
30578369 |
g |
30578369 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 21257252 - 21257183
Alignment:
| Q |
143 |
atatgataggtcctgaggtaggtggctaaggctattgttcccttcttgcggaagggacgagagaatgaatc |
213 |
Q |
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| T |
21257252 |
atatgatag-tcctgaggtatgtagctagggctattgttcctttcttggggaatggacaagagaacgaatc |
21257183 |
T |
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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 43828552 - 43828404
Alignment:
| Q |
69 |
gtacgacc-tggtagaatttgtgcggcatacctttgtgcacagctccgttaactctaatatcgacatagtcgccgatatgataggtcctgaggtaggtgg |
167 |
Q |
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| T |
43828552 |
gtacgaccgtggtagaacttatgaggcatacccttgtgtacagcaccgttaaccctgacatcaacataatcgccgatgtgataggttctgaggtaagtgg |
43828453 |
T |
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| Q |
168 |
ctaaggctattgttcccttcttgcggaagggacgagagaatgaatctct |
216 |
Q |
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| T |
43828452 |
caagggcgattgtacccttcttcctgaatggacgagagaaagagtctct |
43828404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1337 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1337
Description:
Target: scaffold1337; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 688 - 639
Alignment:
| Q |
113 |
ccgttaactctaatatcgacatagtcgccgatatgataggtcctgaggta |
162 |
Q |
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| T |
688 |
ccgttaatcctaatatcgacatagtcaccgatatgataagttctgaggta |
639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 18310 - 18359
Alignment:
| Q |
113 |
ccgttaactctaatatcgacatagtcgccgatatgataggtcctgaggta |
162 |
Q |
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| T |
18310 |
ccgttaatcctaatatcgacatagtcaccgatatgataagttctgaggta |
18359 |
T |
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