View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_52 (Length: 229)
Name: NF11382_low_52
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_52 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 4819245 - 4819467
Alignment:
| Q |
7 |
tcatgtgtaggtgcttacatttcattgattgatgaagttctttaagctaagaaagttttggcagccaacttagaaaattttgctgaccaaagatttattg |
106 |
Q |
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| T |
4819245 |
tcatgtgtcggtgcttacatttcattgatagatgaagttctttaagctaagaaagtattggcagccaacttagaaaattttgctgaccaaagatttattg |
4819344 |
T |
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| Q |
107 |
tcaagatttttccctcaggaatccaacttttttataatgtttgaacagccatttcacattccgtgatttccctgactcatccgagccgcgctctcccaat |
206 |
Q |
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| T |
4819345 |
tcaagatttttccctcaggaatccaacttttttataatgtttgaacagccatttcaccttccgtgatttccctgactcatccgagccacactctcccaat |
4819444 |
T |
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| Q |
207 |
aagtcaaatttgcggcgtttcaa |
229 |
Q |
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| T |
4819445 |
aagtcaaatttgcggcgtttcaa |
4819467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 4806803 - 4806890
Alignment:
| Q |
44 |
ttctttaagctaagaaagttttggcagccaacttagaaaattttgctgaccaaagatttattgtcaagatttttccctcaggaatcca |
131 |
Q |
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| T |
4806803 |
ttctttgagccaagaaagcattagcagctatcttagaaagttctattgaccaacgatttgttgtcaagatttttccctcaggagtcca |
4806890 |
T |
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