View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11382_low_57 (Length: 202)
Name: NF11382_low_57
Description: NF11382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11382_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 39758149 - 39758310
Alignment:
| Q |
24 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
123 |
Q |
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| T |
39758149 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
39758248 |
T |
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| Q |
124 |
tccattaatttctccttcaactcctcaatttcggatttctttctatccaattcggattccct |
185 |
Q |
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| T |
39758249 |
tccatcaatttctccttcaactcctcaattttggatttctttctatccaattcggattccct |
39758310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 39763894 - 39764046
Alignment:
| Q |
33 |
ttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttccttatccattaat |
132 |
Q |
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|||||||||||||| || |||| || ||||||||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||| | | |
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| T |
39763894 |
ttcttttttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattctcattcacaataccttgcaactcattttccttatccatcagt |
39763993 |
T |
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| Q |
133 |
ttctccttcaactcctcaatttcggatttctttctatccaattcggattccct |
185 |
Q |
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| T |
39763994 |
ttctctttcaactcctcaatttcggctttctttctttccaattcggactccct |
39764046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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